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- Affy Sues Illumina in genome-analysis and array technologies
- Illumina/Solexa sequencing of human exons enriched with Nimblegen arrays
- Tech Summary: Illumina's Solexa Sequencing Technology
- Solexa Protocol
- Illumina settles Affy IP Brawl: $90 million and truce
- In Sequence: At AGBT, 454, Illumina, ABI Vow to Improve Speed, Yield, Quality of Next
- In Sequence: Illumina, ABI Testing How Their Next-Gen Tools Can Seq a Human Genome
- In Sequence: Illumina GA’s Deep Coverage Shown to Be Useful for Profiling, Discovery
- In Sequence: Court ‘Encourages’ ABI to Settle Suit Against Former Counsel, Illumina
- In Sequence: UCLA Team Maps Methylation in Arabidopsis At Single-Base Res; Larger Gen
- the filters and syringes for solexa?
- In Sequence: ABI, Illumina, Former Lawyer Fail to Settle IP-Ownership Suit; ABI Seeks
- Sequencing Bioinformatics Webinar
- Illumina/Solexa Genome Analyzer Primer/Adapter Sequences
- Illumina workflow, methods and equipment
- In Sequence: Yale Team Uses an Illumina GA to Sequence Yeast Transcriptome; Finds Gre
- Output file formats
- Control DNA sequencing primer
- DPNII , NlaIII and solexa tag library
- Some doubts
- Gene Expression
- Anyone seen an intensity plot like this?
- TileQC: a system for tile-based quality control of Solexa data
- qPCR quantitation
- Question about Sequencing of mixed small RNA cDNA library
- First Cycle Intensity Issues
- name of solexa output file
- Sample tile images across a lane
- Repetitive reads
- Control Lane - PhiX
- Sample titrations
- sequences on the flow cell
- In Sequence: Illumina, Avantome, Roche, 454 Life Sciences, Applied Biosystems, InteRN
- In Sequence: New Base Caller Improves Accuracy of Long Illumina Reads; May Allow De N
- In Sequence: Bio-Reference Laboratories GeneDx to Launch Genetic Test Based on Illum
- In Sequence: With 15 GB on GA II and Avantome Buy, Illumina Confident in Next-Gen Bat
- In Sequence: Illumina to Buy Avantome for Up to $60M; Long, Cheap Reads Will Target S
- Paper: Substantial biases in ultra-short read data sets from HTP DNA sequencing
- Sequencing WGA ChIP DNA
- Quality Calibration: GApipeline 1.0
- Seq Capture
- which softwate can generate fastq format file?
- Shelf life
- 1st cycle report
- Adapter Enrichment PCR
- Samples with a mixture of cells
- In Sequence: Genome Institute of Singapore, Expression Analysis, Broad Institute, Isi
- bias in mapped forward/reverse read ratios
- Multiplexing
- paired-read transcriptome data analysis
- what kind of program do you use for RNA-seq?
- A C G T intensities
- Missing Enrichments
- Maximum fragment length
- Single or Paired Read
- Spikes in error rate by cycle and tile
- why reads piled up at the repeat regions?
- Solexa Pipeline documentation, or similar?
- Excess PCR primers in final product
- study for isolexa
- quality scores vs prb files
- Inconsistent Manual Focusing on GAII
- illumina / solexa Video
- focus uniformity on GAII
- Data retention policy for Solexa
- In Sequence: With GenomeStudio, Illumina Adds Analysis Software Tools for Its Genome
- Covaris recovery ratio
- In Sequence: Max Planck Institutes, NIEHS, NCGR, Personal Genome Project, Applied Bio
- In Sequence: Illumina Ships ‘Record’ GAs In Q3; Says Longer Reads Will Spur De Novo S
- analyse illumina data
- Paired End PCR
- Sequencing primer concentration
- Understanding Qualities using MAQ
- 32bp?
- Testing SOLiD vs Illumina
- A question about the small RNA sequencing data
- GC content
- Nimblegen linkers
- Gaps in Solexa Libraries
- In Sequence: Independent Studies Use Illumina GA To Sequence Three Human Genomes
- How many cycles you can get out of the 36 cycle kit version 2?
- sonication?
- Focusing problem with new flowcell on GAII
- Need Phix control sequence.txt
- Useful paper for GA users (Sanger's process improvements)
- Homemade illumina oligos and library prep kit
- Sample/Simulated data for testing adaptor trimming
- Index
- ChIP Seq
- Coverage
- Small RNA sequencing
- Anyone using illumina2srf to generate short read archives for NCBI?
- Precipitate in reagents
- max throughput, readlength, cost/run of 454, illumina and helicos ?
- solexa protocol: unique tags
- Solexa: cluster formation
- Protocol for Preparing Paired-End Seq Samples
- Combining data from 2 lines
- Multiplex
- question on solexa genomic dna libraries
- Captured sequences
- concentration of my starting material?
- MAQ command
- Sonicator recommendation
- CASAVA, Pipeline 1.3
- Low quantity of ChIP DNA- Advice?
- solexa data
- DGE on procaryotic organisms
- is is possible?
- Update to the GAII -> GAIIx?
- use of export/sequence data
- solexa genomic adapter and pictures?
- de novo assembly (SSAKE/VELVET)--- reverse complementary strand
- MAQ mapping start from position 17?
- Illumina Genomic DNA Sample Prep
- Small amount of RNA to start with?
- control data
- Difference between eland_multi.txt and eland_extended.txt
- gap alignment and local alignment?
- multiple reads having the same sequence...
- illumina genomic prep
- MAQ and short read length (DGE)
- Small RNA Sample Prep v1.5.0
- Any de novo assembly software can produce ace file?
- repeat reads in Solexa
- mate pair sequencing
- why consed finds discrepancies with masked n sequence
- qiagen and minelute columns
- het. and hom. SNP?
- GGc.G problem with Solexa data
- format puzzle
- recommendations on multiplex?
- context-dependent sequence error
- Longer reads for small RNA sequencing?
- Percent of ChIP-seq reads mapped
- Percentage of usable data per lane
- DNA shearing
- solexa output files | s_*_seq.txt vs. s_*_sequencece.txt
- Read stacks in RNA-seq
- what primer purification level is needed?
- Gbrowse problem???
- export.txt files/ quality filtering
- Spec Sheet Data Output
- Illumina - RNA Seq. - Gene Expression Analysis
- recommendations on paired-end analysis?
- smRNAprimer + genomic primer + PhiX as one control?
- Illumina quality scores
- Advice on analyzing barcoded samples with GERALD/ELAND
- Buffer composition in cluster kit v2
- Amplicon sequencing on Illumina GA II?
- assemble your own mRNA-seq prep kit?
- Question Re:Sequence Attachment to Illumina Flow Cell
- Solexa-mRNAseq
- Delivery delays - is anyone else suffering
- Bad runs: Changes in intensities or error rates
- Problems with Globin genes in mRNAseq paired-end library preparation
- mRNAseq-data analysis
- Mini GA on the way. Illumina to transition array users to sequencing
- Quantify Library before Cluster Generation
- File format
- Illumina DNA Sequencing
- detect SVs
- pipeline 1.4 versus 1.3
- IPAR is now a big, expensive door stop
- Run statistics on GA2 or GA2x...
- Cost per run on GAII
- qPCR quantification of mRNA seq libraries: strange amplicon sizes
- Mate Pair protocol: hydro-shear vs. nebulization
- Custom Illumina adapter synthesis
- Anyone know the Spin-X pore size?
- Illumina SEquencing Companies
- Cluster Station Flow Problems
- Ultrapure ligase from Enzymatics
- A possible problem with multiplex tags just occurred to me
- Primer GX1 GX2 sequence?
- Samtools import problem
- Doing multiplex in one lane only
- Application of paired end short read library to identify promoter region
- missing _int.txt files in Ver 1.4
- PCR enrichment of libraries in 12 cycles or less?
- Enrich the adaptor-modified DNA Fragments by PCR
- Single or Paired-End ChIP
- Number of "good" reads
- Minimum Coverage for ChIP-Seq & RNA-Seq
- denaturation step prior to cluster generation
- Using some of the 12 multiplex tags
- Mapping 'NM' reads GAII Pipeline 1.4
- adapter multimers
- Who's got the biggest....
- nebulizer
- Read quality filtering for long, PE runs
- custom sequencing primers
- can mapview format convert to map format of MAQ
- Will adding 1 nucleotide to the 3' adaptor interfere with the process?
- high first base error rate
- the latest pipeline PL 1.4
- A clarification for Illumina/Solexa Genome Analyzer Primer/Adapter Sequences
- mismatch
- Low Pass Filter %
- Does small RNA sequencing generate comparable reads as regular Solexa sequencing?
- Illumina Primers
- Number of runs required SNP detection transcriptome
- Question about primer modifications
- RNA-seq bias
- SCARF Format Conversion
- Barcoded PE adapters for multiplexing up to 12 samples
- NEB lib prep kit
- GAIIx cooler condensation
- Solicitations Regarding the Recent Upgrades to 120 tile format
- Image re-analysis
- Question about analysis problem for solexa sequencing of RNA profiles
- Library input on the cluster station GA2
- repetitive sequence
- how to get a NlaIII/DpnII tag table of arabidopsis
- are Novex TBE PAGE gels really necessary for DGE?
- 75bp: high error rates on read2
- EDENA assembler
- Sequencing smRNA library from opposite end?
- Reading Summary information
- Hola Comrades
- General control lane used by Illumina/Solexa data?!
- mRNA-seq vs PolII ChIP-seq
- Mouse DpnII libary tag
- mRNA seq 75bp splice file
- The DGE result can't confirm the micorarray data
- SOLiD
- duplicate reads in ChIPSeq
- read length distributions?
- Sequencing result have a lot of "N"
- fragmentation buffer of mRNA-seq
- Anyone need a spare/new prism?
- "Homemade" Illumina PE primers
- 1st Cycle Int (PF)
- SNP Database with Solexa/Illumina Reads
- next_phred & Phaster - call for saving images from GA2
- advantages and disadvantages of adapter barcoding?
- Genome and mapped reads visualization tools
- ELAND standalone problem!!! help~
- Tips for mRNA-seq?
- Please, examine my fastq file. Help me, one more time!
- mRNA seq to multiplexing
- starting mRNAseq with low amounts of RNA
- Troubles with Cluster Density
- Is the flowcell's layout known to affect perceived cluster density on a given tile?
- Illumina fluorophore excitation/emission spectra
- New study using amplicons on Illumina
- Exome reference sequence
- Solexa sequencing machine data required!!
- new sbs 2.5 and v4 seq kits
- Help required
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