Hello,
I have been using maq to align illumina reads to a reference assembly. I am using maq mapcheck to get the read statistics.
I have a question about the section that reports the depth and composition. What exactly does the output "Length of 24 bp unique regions of the reference" measure?
Thanks for your help!
Anamika.
I have been using maq to align illumina reads to a reference assembly. I am using maq mapcheck to get the read statistics.
I have a question about the section that reports the depth and composition. What exactly does the output "Length of 24 bp unique regions of the reference" measure?
Thanks for your help!
Anamika.