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Hi,
i'm having some teeting problems trying out bowtie2 and I was wondering if anyone else had encountered the same thing. I'm trying this command:
% bowtie2 -p 20 -a -x ref_genome -1 sample.fq_1 -2 sample.fq_2 -S mapped_sample.sam
The job starts off well and mapped_sample.sam fills up with the expected output until it reaches a threshold of ~50Mb at which point the job continues running but the SAM file doesn't get any bigger. I thought perhaps it may be a quota problem but it looks like that isn't the case.
Any suggestions much appreciated.
i'm having some teeting problems trying out bowtie2 and I was wondering if anyone else had encountered the same thing. I'm trying this command:
% bowtie2 -p 20 -a -x ref_genome -1 sample.fq_1 -2 sample.fq_2 -S mapped_sample.sam
The job starts off well and mapped_sample.sam fills up with the expected output until it reaches a threshold of ~50Mb at which point the job continues running but the SAM file doesn't get any bigger. I thought perhaps it may be a quota problem but it looks like that isn't the case.
Any suggestions much appreciated.