Hi All,
Could you recommend a software for mapping SOLiD reads?
I do not care about the running time and splice mapping. My purpose is to map as many reads as possible to the reference genome.
I tested a few softwares, inlcuding corona, socs, and bfast(with default parameters). It seems that corona can map ~55% reads, while socs maps ~25% reads and bfast maps ~35% reads.
Could you give me some suggestions?
Thank you!
-Cuncong
Could you recommend a software for mapping SOLiD reads?
I do not care about the running time and splice mapping. My purpose is to map as many reads as possible to the reference genome.
I tested a few softwares, inlcuding corona, socs, and bfast(with default parameters). It seems that corona can map ~55% reads, while socs maps ~25% reads and bfast maps ~35% reads.
Could you give me some suggestions?
Thank you!
-Cuncong
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