runAssembly error

[mack]

Hi all,

I am running a cdna assembly with runAssembly (ver 2.3) and got the following error during the building of the contigs/isotigs stage:

Error: An internal error has occurred in the computation.
Assertion: chordId >= 0 && chordId < numChords
Location: 'Chord* ChordCache::getChord(int)' [ChordCache.h:44]
Please report this error to your customer support representative.

The assembly involves paired-end Sanger reads together with some Titaniums reads. Anyone knows about this error and way to get around it? Thanks.

[flxlex]

These cryptic messages happen sometimes and indicate a bug in newbler. I guess you're stuck with following the instructions and contacting your local Roche rep...