--------------------------------- EXAMPLE 1 Query= Contig_8861 Length=1056 Score E Sequences producing significant alignments: (Bits) Value 213209 Contig_14521 1249 0.0 ALIGNMENTS >lcl|213209 Contig_14521 Length=1067 Score = 1249 bits (676), Expect = 0.0 Identities = 904/1016 (89%), Gaps = 8/1016 (1%) Strand=Plus/Minus Query 49 CCACGTTGTGATTACGTACAGATAACAGATGAAGTGTCCACATAAAGATCTGTTAAGCTG 108 ||||||||||||||| ||||||||||||||| | ||| |||| ||||||||| |||||| Sbjct 1016 CCACGTTGTGATTACATACAGATAACAGATGTACTGTTCACAGAAAGATCTGGAAAGCTG 957 Query 109 ATCCCAAAAGGATTAGTTCCTAAACTGCTAAACATACTACTACAATTATTCGAGCACATC 168 ||||||||| | | ||||||||||||||||||||||||| |||||||||| ||||| ||| Sbjct 956 ATCCCAAAAAGTTCAGTTCCTAAACTGCTAAACATACTATTACAATTATTTGAGCAAATC 897 Query 169 CCAGTGAGA--GATGAAACATGCACTGGGAGAAAGCCTAAGGTAATCTAAATGCTAAACT 226 ||||||||| || ||||| ||| |||||||||||||||||||| | ||||||||||||| Sbjct 896 CCAGTGAGACGGACGAAACTTGCGCTGGGAGAAAGCCTAAGGTATTTTAAATGCTAAACT 837 Query 227 TAGCAACTAATAGGTGCACCTGGTTGATGTTGCGGGGTGTGTGCTGGCCCTGGTTGGTTG 286 |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| Sbjct 836 TAGCAACTAATAGGTGCAGCTGGTTGATGTTGTGGGGTGTGTGCTGGCCCTGGTTGGTTA 777 Query 287 ATCTCGCCATTATCCATCATCAAACTTGTTCTATTCTTTTCTTTCTCTTGTTCCAGCGAC 346 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 776 ATCTCGCCATTATCCATCATCAAACTTGTTCTACTCTTTTCTTTCTCTTGTTCCAGCGAC 717 Query 347 CTGTACTCTCCAAAGTTCGCGTAGGAATCATTAGCTTTCCCAACTAATCCAGGTTCCTGG 406 |||||| ||||||||| | | ||||| |||||||||||||||||||| || ||||| Sbjct 716 CTGTACACTCCAAAGTCCAAGCAGGAACCATTAGCTTTCCCAACTAATGTAGATTCCTCA 657 Query 407 ATATTGTCAGTTTCGTCTCCTGCAACACTTCTTTCTGGTGTGACCTTATCTGGAATATCT 466 | |||| |||| || ||||||||||| || || |||||||||||||||||||||||||| Sbjct 656 ACATTGCCAGTCTCCCCTCCTGCAACATTTGTTCCTGGTGTGACCTTATCTGGAATATCT 597 Query 467 CGGTTCACGTCACCTGCACTACTATCTTCATCAATTTG-A--ATCTCTAGCTTTTCTCCA 523 ||||||| |||||||||| | |||| ||||||||| | ||||||||||||||||| Sbjct 596 TGGTTCACATCACCTGCACAGCCGTCTTTATCAATTTGGATCTTCTCTAGCTTTTCTCCA 537 Query 524 GATCCATGTTTCTCCTCGACTTCTAGTTCAGCTTCAGCAGCATTTGCTTTTCCAAAGACT 583 || ||||||| |||||| |||||| || | |||||||||||||||| || ||||| | || Sbjct 536 GAACCATGTTCCTCCTCAACTTCTGGTCCGGCTTCAGCAGCATTTGTTTCTCCAACGGCT 477 Query 584 GCATCTGCTACCACTCCCTCAAAATTATCCTTGTCCGTGGAATTGTTATGTAGCTCGGCA 643 ||||||||||||| ||||| |||| ||| |||||| | |||| |||||| | ||||||| Sbjct 476 GCATCTGCTACCAGTCCCTTGAAATCATCATTGTCCATAGAATCGTTATGGACCTCGGCA 417 Query 644 TCAATGGCAATGGTTTCCTCTGAGCCATTTCCTGCCATTTTATCTC--CA-TTGTCAACC 700 |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 416 TCAATGGCAATGGTTTCCTCTGAGCCATTTCCTGCCATTTTATCTCTTCCGTTGTCAACC 357 Query 701 TCAGTGTCATTGCTGGCCTCAATTttcttctctgaagcatctctatcaggcatttcctct 760 |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| Sbjct 356 TCAGTGTCATTGCTGGCCTCCATTTTCTTCTCTGGAGCATCTCTATCAGGCATTTCCTCT 297 Query 761 tcttttttgttctctgtgtcttctttcttagcccctatctcgtccttctcctcttcctcc 820 |||||||||| ||||| | ||||||||||||||||||||||||||||||||| |||||| Sbjct 296 TCTTTTTTGTGCTCTGAGACTTCTTTCTTAGCCCCTATCTCGTCCTTCTCCTTGTCCTCC 237 Query 821 ATATCAGCTTCTACTACATTTTCCTCTTCTTCTCTGGAAAATTCCATCTCTTTCTTGTCC 880 || ||| |||||| |||||||||| ||||||||||| | ||||||| |||||||||||| Sbjct 236 ATTTCATATTCTACAACATTTTCCTTTTCTTCTCTGGCAGATTCCATATCTTTCTTGTCC 177 Query 881 AAGTTTTCCTTCTCTACATTTGATACTTCCATTTCCTCATCTTTTTTGGTAGCTGATGTT 940 ||||||||||| |||||||||| ||| |||||||||| ||||| |||| ||| ||| | | Sbjct 176 AAGTTTTCCTTATCTACATTTGCTACATCCATTTCCTTATCTTCTTTGATAGTTGAAGAT 117 Query 941 GTTCGACGTCTTTTCTTTGTCGGCTCAACCACTGCCGTAGGAGGCATTGCCTTAACCTTC 1000 |||||||||| ||||||||||||||||||| ||||| || | |||||||||||||||||| Sbjct 116 GTTCGACGTCGTTTCTTTGTCGGCTCAACCGCTGCCATAAGGGGCATTGCCTTAACCTTC 57 Query 1001 TCACTGATCCGCGCTGATCTCCTTCGATTCTCAATGGTACTCCAATCAAATTCTGA 1056 ||||||||||| |||||||||||| |||||||| | | |||||||||||||||||| Sbjct 56 TCACTGATCCGTGCTGATCTCCTTGGATTCTCACTAGAACTCCAATCAAATTCTGA 1 --------------------------------- EXAMPLE 2 query= Contig_5212 Length=333 Score E Sequences producing significant alignments: (Bits) Value 255217 Contig_5213 246 1e-69 ALIGNMENTS >lcl|255217 Contig_5213 Length=596 Score = 246 bits (133), Expect = 1e-69 Identities = 143/148 (97%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 1 GAAGATCACATTCAATTTATCGTGACGACATTTTTTGGACAAGTTGTTACTCTCTCCACC 60 |||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||| Sbjct 178 GAAGATCACATTCAATTTGTCGTCTCGACATTTTTCGGACAAGTTGTTACTCTCTCCACC 237 Query 61 CATCCATATGGCTGTCGAGTAATACAGAGAGTATTGGAACATTGTAGCGATCCAGAAACC 120 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 238 CATCCATATGGCTGTCGAGTAATACAGAGAGTATTGGAACACTGTAGCGATCCAGAAACC 297 Query 121 CAAAGTAAAGTGATGGAAGAAATCTTGG 148 |||||||||||||||||||||||||||| Sbjct 298 CAAAGTAAAGTGATGGAAGAAATCTTGG 325 Score = 211 bits (114), Expect = 4e-59 Identities = 118/120 (98%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 214 GGGAAGCCGCATGAGCGCTCTACCATAATTCAGGAACTAGCTGGGAAGATTGTGCAAATG 273 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 372 GGGAAGCCGCATGAGCGCTCTACTATAATTCAGGAACTAGCTGGGAAGATTGTGCAAATG 431 Query 274 AGTCAGCAGAAGTTTGCCTCTAATGTTGTAGAGAAGTGTTTAACTTATTGTAATTCCAGC 333 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 432 AGCCAGCAGAAGTTTGCCTCTAATGTTGTAGAGAAGTGTTTAACTTATTGTAATTCCAGC 491 --------------------------------- EXAMPLE 3 Query= Contig_257 Length=894 Score E Sequences producing significant alignments: (Bits) Value 36541 Contig_5570 1303 0.0 ALIGNMENTS >lcl|36541 Contig_5570 Length=938 Score = 1303 bits (705), Expect = 0.0 Identities = 795/840 (95%), Gaps = 0/840 (0%) Strand=Plus/Minus Query 55 AAGTAGaaaaaaaaGATGGAGACCTTCCCAGTTGTTGACATGGAGATGCTTAACACTGAA 114 ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 890 AAGGAGAAAAAAAAGATGGAGACCTTCCCAGTGATTGACATGGAGATGCTTAACACTGAA 831 Query 115 CAAAGGGTTGCGATTATGGAGAAATTAAAGGATGCTTGTGAAAATTGGGGCTTCCTTGAG 174 ||||| | ||||| ||||||||| |||||||||| |||||||||||||||||||||||| Sbjct 830 CAAAGAGCTGCGACAATGGAGAAAATAAAGGATGCCTGTGAAAATTGGGGCTTCCTTGAG 771 Query 175 CTGGTGAATCATGGGATCTCTCATGAGCTTATGGATACTGTGGAGAAGCTAACAAAGGAA 234 ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| Sbjct 770 CTGGTGAATCATGGGATATCTCATGAGCTTATGGACACTGTGGAGAAGCTAACAAAGGAA 711 Query 235 CATTACAAGAAGTGTATGGAACAAAGATTCAAAGAAATGGTGGCAAACAAAGGACTTGAG 294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 710 CATTACAAGAAGTGTATGGAACAAAGATTCAAAGAAATGGTGGCAAACAAAGGACTTGAG 651 Query 295 GCTGTTCAAACTGAGATTGATGATTTGGATTGGGAAATTACTTTCTTCTTGAAACACCTT 354 |||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 650 GCTGTTCAGGCTGAGATTGATGATTTGGATTGGGAAAGTACTTTCTTCTTGAAACATCTT 591 Query 355 CCTGTTTCAAACATCTCAGATGTTCCTGATCTTGATCATGACTACAGGAAGGTGATGAAA 414 |||||||||||||||||||||||||||||||||| | |||| |||||||||||||||||| Sbjct 590 CCTGTTTCAAACATCTCAGATGTTCCTGATCTTGTTGATGATTACAGGAAGGTGATGAAA 531 Query 415 GAATTTGCACAAAAACTAGAGAAACTGGCAGAGGATCTTTTGGACTTGCTATGTGAGAAT 474 ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 530 GAATTCGCACAAAAACTAGAGAAACTAGCAGAGGATCTTTTGGACTTGCTATGTGAGAAC 471 Query 475 CTTGGCCTTGAACAAGGTTATCTAAAGAAGGCTTTTTATGGTACAAAAGGTCCAACTTTT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 470 CTTGGCCTTGAACAAGGTTATCTAAAGAAGGCTTTTTATGGTACAAAAGGTCCAACTTTT 411 Query 535 GGAACAAAGGTAGCCAATTACCCACCTTGTCCAAAACCAGAACTAATCAAGGGTCTAAGG 594 ||||||||||| || |||||||||||||||||||||||||||||||| || ||||| ||| Sbjct 410 GGAACAAAGGTTGCTAATTACCCACCTTGTCCAAAACCAGAACTAATTAAAGGTCTTAGG 351 Query 595 GCTCACACAGATGCAGGTGGAATCATACTTCTATTCCAAGATGACAAAGTCAGTGGACTA 654 |||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| Sbjct 350 GCTCACACAGATGCAGGTGGCATTATACTTCTATTCCAAGATGACAAAGTCAGTGGACTA 291 Query 655 CAACTCCTAAAAGATGGTAAATGGATTGATGTCCCACCAATGAGCCACTCAATTGTTGTC 714 || |||||||||||||| |||||||||||||||||||||||| ||||||| ||||| || Sbjct 290 CAGCTCCTAAAAGATGGCAAATGGATTGATGTCCCACCAATGCGCCACTCCATTGTCATC 231 Query 715 AACATAGGTGACCAATTAGAGGTGATCACAAATGGAAAATACAAGAGTGTGGAGCACAGG 774 ||| | || |||||| | ||||||||||||||||||||||||||||||||||||||||| Sbjct 230 AACCTCGGCGACCAACTTGAGGTGATCACAAATGGAAAATACAAGAGTGTGGAGCACAGA 171 Query 775 GTAATTGCTCAGCCAGATGGGAACAGGATGTCCATAGCATCTTTCTACAATCCAGGGAGT 834 |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| Sbjct 170 GTAATTGCTCAGCCAGATGGGAACAGGATGTCTATAGCATCTTTCTACAATCCGGGGAGT 111 Query 835 GATGCTGTCATTTTTCCAGCACCAGAATTGGCTGAGAAAGAAGAAAAGAAAAACAAACTA 894 |||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct 110 GATGCTGTAATTTTTCCAGCACCAGAATTGGCTGATAAAGAAGAAAAGGAAAACAAACTA 51