*** progs/illumina2srf.c.orig Tue Nov 18 04:11:52 2008 --- progs/illumina2srf.c Thu Apr 9 09:14:26 2009 *************** *** 2697,2713 **** } } - bustard_params = load("../.params", NULL); if( pipeline_version == PL_1_3 ) { bustard_config = load("config.xml", NULL); } /*AMB: Add *../../.params if needed as well as *two (possibly) required matrix.txt files*/ if( is_basecallable ) { - firecrest_params = load("../../.params", NULL); - if ( pipeline_version == PL_1_3 ) { if( (firecrest_config = load("../config.xml", NULL)) == NULL){ fprintf(stderr,"Cannot find firecrest config.xml file requried for basecalling\n"); --- 2697,2712 ---- } } if( pipeline_version == PL_1_3 ) { bustard_config = load("config.xml", NULL); + } else { + bustard_params = load("../.params", NULL); } /*AMB: Add *../../.params if needed as well as *two (possibly) required matrix.txt files*/ if( is_basecallable ) { if ( pipeline_version == PL_1_3 ) { if( (firecrest_config = load("../config.xml", NULL)) == NULL){ fprintf(stderr,"Cannot find firecrest config.xml file requried for basecalling\n"); *************** *** 2715,2720 **** --- 2714,2720 ---- } } else if ( pipeline_version == PL_1_0 ) { + firecrest_params = load("../../.params", NULL); if( firecrest_params == NULL ){ fprintf(stderr,"Cannot find firecrest .params file requried for basecalling\n"); goto error;