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\f0\fs24 \cf0 Here is the contents of validate.sh.out\
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Tue Dec 2 16:04:33 MST 2008 Checking for prerequisites\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite perl\
Tue Dec 2 16:04:33 MST 2008 prerequisite perl found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite perl\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for perl is 5.6\
Tue Dec 2 16:04:33 MST 2008 Found perl version 5.8.8\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite python\
Tue Dec 2 16:04:33 MST 2008 prerequisite python found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite python\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for python is 2.2\
Tue Dec 2 16:04:33 MST 2008 Found python version 2.4.3\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite make\
Tue Dec 2 16:04:33 MST 2008 prerequisite make found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite make\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for make is 3.78\
Tue Dec 2 16:04:33 MST 2008 Found make version 3.81\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite gnuplot\
Tue Dec 2 16:04:33 MST 2008 prerequisite gnuplot found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite gnuplot\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for gnuplot is 3.7\
Tue Dec 2 16:04:33 MST 2008 Found gnuplot version 4.0\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite convert\
Tue Dec 2 16:04:33 MST 2008 prerequisite convert found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite convert\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for convert is 5.4.7\
Tue Dec 2 16:04:33 MST 2008 Found convert version 6.2.8\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite g++\
Tue Dec 2 16:04:33 MST 2008 prerequisite g++ found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite g++\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for g++ is 3.2.2\
Tue Dec 2 16:04:33 MST 2008 Found g++ version 4.1.2\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite bzip2\
Tue Dec 2 16:04:33 MST 2008 prerequisite bzip2 found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite bzip2\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for bzip2 is 1.0.2\
Tue Dec 2 16:04:33 MST 2008 Found bzip2 version 1.0.3\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite gzip\
Tue Dec 2 16:04:33 MST 2008 prerequisite gzip found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite gzip\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for gzip is 1.3.3\
Tue Dec 2 16:04:33 MST 2008 Found gzip version 1.3.5\
Tue Dec 2 16:04:33 MST 2008 Checking for required library zlib\
Tue Dec 2 16:04:33 MST 2008 [header file zlib.h, linking with -lz,\
Tue Dec 2 16:04:33 MST 2008 using zlibVersion() in test code]\
Tue Dec 2 16:04:33 MST 2008 Wrote source to /tmp/test_zlib_1228259073.cpp.\
Tue Dec 2 16:04:34 MST 2008 Ran 'g++ -o /tmp/test_zlib_1228259073.bin /tmp/test_zlib_1228259073.cpp -lz' with result 0\
Tue Dec 2 16:04:34 MST 2008 Output was: ''\
Tue Dec 2 16:04:34 MST 2008 zlib : OK\
Tue Dec 2 16:04:34 MST 2008 Checking for required library bzlib\
Tue Dec 2 16:04:34 MST 2008 [header file bzlib.h, linking with -lbz2,\
Tue Dec 2 16:04:34 MST 2008 using BZ2_bzlibVersion() in test code]\
Tue Dec 2 16:04:33 MST 2008 prerequisite g++ found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite g++\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for g++ is 3.2.2\
Tue Dec 2 16:04:33 MST 2008 Found g++ version 4.1.2\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite bzip2\
Tue Dec 2 16:04:33 MST 2008 prerequisite bzip2 found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite bzip2\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for bzip2 is 1.0.2\
Tue Dec 2 16:04:33 MST 2008 Found bzip2 version 1.0.3\
Tue Dec 2 16:04:33 MST 2008 checking for prerequisite gzip\
Tue Dec 2 16:04:33 MST 2008 prerequisite gzip found\
Tue Dec 2 16:04:33 MST 2008 checking version for prerequisite gzip\
Tue Dec 2 16:04:33 MST 2008 minimum recommended version for gzip is 1.3.3\
Tue Dec 2 16:04:33 MST 2008 Found gzip version 1.3.5\
Tue Dec 2 16:04:33 MST 2008 Checking for required library zlib\
Tue Dec 2 16:04:33 MST 2008 [header file zlib.h, linking with -lz,\
Tue Dec 2 16:04:33 MST 2008 using zlibVersion() in test code]\
Tue Dec 2 16:04:33 MST 2008 Wrote source to /tmp/test_zlib_1228259073.cpp.\
Tue Dec 2 16:04:34 MST 2008 Ran 'g++ -o /tmp/test_zlib_1228259073.bin /tmp/test_zlib_1228259073.cpp -lz' with result 0\
Tue Dec 2 16:04:34 MST 2008 Output was: ''\
Tue Dec 2 16:04:34 MST 2008 zlib : OK\
Tue Dec 2 16:04:34 MST 2008 Checking for required library bzlib\
Tue Dec 2 16:04:34 MST 2008 [header file bzlib.h, linking with -lbz2,\
Tue Dec 2 16:04:34 MST 2008 using BZ2_bzlibVersion() in test code]\
Tue Dec 2 16:04:34 MST 2008 Wrote source to /tmp/test_bzlib_1228259074.cpp.\
Tue Dec 2 16:04:34 MST 2008 Ran 'g++ -o /tmp/test_bzlib_1228259074.bin /tmp/test_bzlib_1228259074.cpp -lbz2' with result 0\
Tue Dec 2 16:04:34 MST 2008 Output was: ''\
Tue Dec 2 16:04:34 MST 2008 bzlib : OK\
Tue Dec 2 16:04:34 MST 2008 Checking for required library fftw\
Tue Dec 2 16:04:34 MST 2008 [header file fftw3.h, linking with -lfftw3f,\
Tue Dec 2 16:04:34 MST 2008 using fftwf_version in test code]\
Tue Dec 2 16:04:34 MST 2008 Wrote source to /tmp/test_fftw_1228259074.cpp.\
Tue Dec 2 16:04:34 MST 2008 Ran 'g++ -o /tmp/test_fftw_1228259074.bin /tmp/test_fftw_1228259074.cpp -lfftw3f' with result 1\
Tue Dec 2 16:04:34 MST 2008 Output was: '/usr/bin/ld: cannot find -lfftw3f collect2: ld returned 1 exit status'\
Tue Dec 2 16:04:34 MST 2008 fftw : CHECK FAILED\
Tue Dec 2 16:04:34 MST 2008 WARNING: prerequisite library fftw not found\
Tue Dec 2 16:04:34 MST 2008 WARNING: (Note that on platforms for which fftw is made available as\
Tue Dec 2 16:04:34 MST 2008 WARNING: separate run-time and development packages, this may be due\
Tue Dec 2 16:04:34 MST 2008 WARNING: to the development package not having been installed.\
Tue Dec 2 16:04:34 MST 2008 WARNING: Check that fftw3.h can be found in the standard include paths.)\
Tue Dec 2 16:04:34 MST 2008 WARNING:\
Tue Dec 2 16:04:34 MST 2008 WARNING: The --skip-fftw-check option may be used to bypass\
Tue Dec 2 16:04:34 MST 2008 WARNING: checking for an FFTW installation, e.g. if some other\
Tue Dec 2 16:04:34 MST 2008 WARNING: Pipeline-compatible FFT library is installed.\
Tue Dec 2 16:04:34 MST 2008 Checking for required Perl library XML::Simple\
Tue Dec 2 16:04:34 MST 2008 Wrote test script to /tmp/test_XML__Simple_1228259074.pl.\
Tue Dec 2 16:04:34 MST 2008 Ran '/tmp/test_XML__Simple_1228259074.pl' with result 0\
Tue Dec 2 16:04:34 MST 2008 Output was: '2.18'\
Tue Dec 2 16:04:34 MST 2008 XML::Simple : OK\
Tue Dec 2 16:04:34 MST 2008 Finished checking for prerequisites\
Tue Dec 2 16:04:34 MST 2008 Failed prerequisite checking.\
\
and here is the command line errors after typing "make"\
[root@localhost GAPipeline-1.0]# make\
./validate.sh --prereqs\
Checking for prerequisites\
WARNING: prerequisite library fftw not found\
WARNING: (Note that on platforms for which fftw is made available as\
WARNING:  separate run-time and development packages, this may be due\
WARNING:  to the development package not having been installed.\
WARNING:  Check that fftw3.h can be found in the standard include paths.)\
WARNING:  \
WARNING: The --skip-fftw-check option may be used to bypass\
WARNING: checking for an FFTW installation, e.g. if some other\
WARNING: Pipeline-compatible FFT library is installed.\
Failed prerequisite checking.\
See /root/Desktop/GAPipeline-1.0/./validate.sh.out for details.\
make: *** [prereqs] Error 255\
[root@localhost GAPipeline-1.0]# \
\
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}