FGENESH 2.6 Prediction of potential genes in White genomic DNA Time : Mon Dec 10 15:34:00 2012 Seq name: contig_1 Length of sequence: 14596 Number of predicted genes 4: in +chain 3, in -chain 1. Number of predicted exons 21: in +chain 16, in -chain 5. Positions of predicted genes and exons: Variant 1 from 1, Score:181.116321 G Str Feature Start End Score ORF Len 1 + TSS 1906 -0.26 1 + 1 CDSo 3512 - 3832 29.70 3512 - 3832 321 1 + PolA 4958 2.28 2 + TSS 5940 -3.06 2 + 1 CDSf 6681 - 6704 -3.25 6681 - 6704 24 2 + 2 CDSi 6842 - 6957 11.03 6842 - 6955 114 2 + 3 CDSl 7041 - 7362 29.01 7042 - 7362 321 2 + PolA 7457 -4.62 3 - PolA 7985 -2.52 3 - 1 CDSl 8270 - 8443 22.44 8270 - 8443 174 3 - 2 CDSi 8519 - 8797 36.82 8519 - 8797 279 3 - 3 CDSi 8889 - 9038 27.27 8889 - 9038 150 3 - 4 CDSi 9128 - 9177 -3.95 9128 - 9175 48 3 - 5 CDSf 9577 - 9856 26.75 9578 - 9856 279 3 - TSS 10053 -6.75 4 + TSS 10304 -10.37 4 + 1 CDSf 10441 - 10564 6.40 10441 - 10563 123 4 + 2 CDSi 10624 - 10674 9.55 10626 - 10673 48 4 + 3 CDSi 10725 - 10778 4.30 10727 - 10777 51 4 + 4 CDSi 10997 - 11053 3.32 10999 - 11052 54 4 + 5 CDSi 11106 - 11182 -0.47 11108 - 11182 75 4 + 6 CDSi 11235 - 11402 -3.23 11235 - 11402 168 4 + 7 CDSi 11453 - 11626 3.80 11453 - 11626 174 4 + 8 CDSi 11697 - 12053 7.85 11697 - 12053 357 4 + 9 CDSi 12116 - 12285 -2.38 12116 - 12283 168 4 + 10 CDSi 12348 - 12495 10.74 12349 - 12495 147 4 + 11 CDSi 12545 - 13190 9.13 12545 - 13189 645 4 + 12 CDSi 13273 - 14593 25.60 13275 - 14591 1317 Predicted protein(s): >FGENESH:[mRNA] 1 1 exon (s) 3512 - 3832 321 bp, chain + ATGTCGAAGCTCGACAGCTTCCTCAAGGAGACCCAGCGGTTCACGGGGGTGGCACTCGGT AAGCACTCGTACTCTGCCTTCGCATCCTCGCGTCTCACTCAATGTGCCCTATCGCTCTGC GATCGTGTAGCATCGATGATGAAGAAGGCGATGAAGGACGTGCTGCTGAGCGACGGGACG TTCGTCCCGGAGGGCACGATCCTCCTCACCGCGCACAGCCCGGTGCACCGGGACGAGAGG TACTACCCCGACCCCGACGTCTTCGACCCCTTCCGGTGCTCGCGCGAGCGCGAGCGCGAC GGAGACAGCGTCAAGCACTAG >FGENESH: 1 1 exon (s) 3512 - 3832 106 aa, chain + MSKLDSFLKETQRFTGVALGKHSYSAFASSRLTQCALSLCDRVASMMKKAMKDVLLSDGT FVPEGTILLTAHSPVHRDERYYPDPDVFDPFRCSRERERDGDSVKH >FGENESH:[mRNA] 2 3 exon (s) 6681 - 7362 462 bp, chain + ATGACACCACTTTGTTGCTGGCGGTCGGACCTGTTCCGCGTGAAGCATGTAGGCGTTAGC ATACAGGCCAACGGTGCCGCCGCCGTCACCGTCCGGCGGAACCTCCTCTGGCACTTCGCC GAGACCGTGCATATCATCCGGGATATCTACCGCGAAGAGTCGCCCGGCGCACTGTTCAAG GGCCTTGGGCCCACGCTCGTTGGCGTCATCCCCGCGCGGTCCATCAACTTCTTCACGTAC GGCAACGGCAAGCAGATCATCGCCAACACCTTCAACCACGGCCAGGAGAACTCGTGGGTC CACCTCGGCGCCGCCGCCGTCGCAGGCGTCGCGACCGGCACCGCGACGAACCCGATCTGG GTCGTCAAGACCCGTCTTCAGCTCGACGCGCACCGGCTCGAGTTGTCTGGCGGCGGAAAA TCGTTCTTCGGGGGTTCCTCGCGACGATCAAGCAGATTTTGA >FGENESH: 2 3 exon (s) 6681 - 7362 153 aa, chain + MTPLCCWRSDLFRVKHVGVSIQANGAAAVTVRRNLLWHFAETVHIIRDIYREESPGALFK GLGPTLVGVIPARSINFFTYGNGKQIIANTFNHGQENSWVHLGAAAVAGVATGTATNPIW VVKTRLQLDAHRLELSGGGKSFFGGSSRRSSRF >FGENESH:[mRNA] 3 5 exon (s) 8270 - 9856 933 bp, chain - ATGATCGGAGACGAGGCCGCAGAGAACCGCAATTTCCTCCAGGTGACGCAGCCGATGGAG CACGGTATCGTGCGCAACTGGGAGGACATGAAGCTCCTCTGGGACTACACCTTCGACGAG AAGCTCCGGGTGGACACCCGCGGCCGCAAGGTGCTCCTGACGGAGCCACCGATGAACCCG AAGGTCAACAGGCAACGGATGGCGCAGGTCATGTTCGAGGAGTATGGCTTCCAGGGGGTC TATGTCGCCATCCAGGCAGTGTTGACGCTGTATTCGCAAGGTCTTACAACCGGCGTGGTC GTCGACTCCGGAGACGGTGTCACGCACATCCTCCTCCTCATGCGTGGATACGCCTTCAAC CGGACAGCAGACTTCGAGACCGTCCGCGAGATCAAGGAGAAGCTCTGCTACGTCAGCTAC GACCTCGACCTCGACACGCGGCTATCAGAAGAGACGACCGTCCTCGTCGAGAACTATACG CTCCCTGACGGACGCGTCATCAAAATCGGCTCGGAGCGATTCGAAGCCCCCGAATGCATG TTCCAGCCGCACCTCGTCGACGTCGAGCAGCCAGGCGTCGCAGAGATGCTCTTCCAGGCG ATCCAGTCCGCCGCCGTCGACGTCCGCGCCGAGCTCTACAAGCACATCGTCCTCTCCGGC GGCTCGAGCATGTACCCCGGCCTCCCGAGCCGCCTCGAGAAGGAGATGAAGCAGCTCTAC CTCACCCGCGTCCTCAACGGCGACCCCTCGCGCCTCAACAAATTCAAGATCCGCATCGAG GACCCCCCGCGCCGGAAGCACATGGTCTTCCTCGGCGGCGCGGTGCTCGCGGACATCATG AAGCAGCGCGAAGAGTTCTGGATTACGCGCGAGGAGTGGTTCGAGCAGGGCGTGCGCGCG CCGGACAAGCTCGGGCGGGGCGAGAACATCTGA >FGENESH: 3 5 exon (s) 8270 - 9856 310 aa, chain - MIGDEAAENRNFLQVTQPMEHGIVRNWEDMKLLWDYTFDEKLRVDTRGRKVLLTEPPMNP KVNRQRMAQVMFEEYGFQGVYVAIQAVLTLYSQGLTTGVVVDSGDGVTHILLLMRGYAFN RTADFETVREIKEKLCYVSYDLDLDTRLSEETTVLVENYTLPDGRVIKIGSERFEAPECM FQPHLVDVEQPGVAEMLFQAIQSAAVDVRAELYKHIVLSGGSSMYPGLPSRLEKEMKQLY LTRVLNGDPSRLNKFKIRIEDPPRRKHMVFLGGAVLADIMKQREEFWITREEWFEQGVRA PDKLGRGENI >FGENESH:[mRNA] 4 12 exon (s) 10441 - 14593 3345 bp, chain + ATGGCGCGCGGGGTGGCTTCACCCGCGCCGAACGCGCTCCCCAAGGTCTCCTTCGTGAAG GTCACCGACGATGCTACGCAGCAAGCAACCGGAGTCGCTGATCAAGTTGCACTGTCGTAT GGATACAATGGCCCCTCAGTTTTCCAGCAGGAGAAGCACTACATTCGCTACATCGAACCG CTTGAGAGCGACCTCGCGGTCCAGGTTGAATATGACATGGACGAGCAAGGAGAAAACGCG AATGCTATTGTGTTCTGTGACGGTTGCAATCTCGCCGTCCACCAAGATTGTTATGGTGTT CCATACATCCCGGAGGGGCAGTGGCTCTGTAGGAAGTGCACAGTTTCCCCGGAGAACCCA GTCTCCGGCATTCTGTGCCCGAAGGAGGGCGGAGCATTCAAACAGACCGTCTCGGGCGAC TGGGTCCACTTACTATGTGCGATATGGGTGCCAGAGACAGCTGTCGCGAATGAAGGATTC ATGGAACTCATCACCGGAGTGGAGAAGATTTCGAAGCAGCGCTGGAGACTGAGGTGTTCG GTGTGCGATGAGAAGCACGGTGCCTGCATCCAATGCACCAAGCCGTCATGTTTGACGGCG TTCCACGCTACGTGCGCCCGAAAGGAGAAGCTCCTCATGCCGATGAAAGCGAGCCAGGGT TCAGAAGCCCCGGTCCTCGCATGCTATTGTGAGAAGCATCTGCCGCTCGAGCAACTGAAC GTACGTGAGGCGGCCATCCAAGCCGACTCGGATGAGGGAGACGAAATGGACGGTCACCAC CCGACGCCAAAATCCAGCAAGAGCGCGCGGGCATACAACAGGATGTACAAGCCAGGCCCA CCGCTCGTCCCAAGGATCATCGTGAACCGTATTCTGCATTACATTTCCAGGATACAGGTG CGGCACAAGCAGGATTTCGTCCATCTGGTGTGTCGGTACTGGAGCCTGAAGCGGGAGGCG AGACGAGGAACCCCTCTGCTCAAGCGGCTGCACCTCGAGCCTTGGACCGCGCTGTCGGGT AGCAAGCAGCAGACGGACCAGGAAAAGGCTGCGAAGCTGGACCTCATGAAAGGACTCGGG GACGACTTGGAGAGACTGCGTACCATCGCAGAAGTCGTCCGTCTGCGCGAGCGCGTGAAA CAGGCGCAATCCGAGGCCGTCCAGGATGTCCTGTTGCAGTTTTTATTCCCCCACGAAGGT CCCCTGAGGTTGGCGTTTCAGAAGATCACTGCGCATGACAGACAAAATGGCTATTTCAAG ACGCCTGTGAGCAGAACGGAGGTTCCCGACTACTACGACGTCATCAAGAACCCGATGTGC TGGGACATGATAGATCAGAAGCTGGACAGGCACGAGTATCTGGATCTGGCAGAGTTCAAG CGCGACATCAATCTCGTGCTAGACAACGCAACGACGTATAACGAGCCAGGCACTCCCTAC TACAAGACTGCAGTGCGTATACGGATGGCCGCGCAGGCGCTACTCGCAGAGCTGGACGGG CTTGTCCACCACCCACCCGCTGCCATGACTGATCCTGAGCCACTCATCGACGGGGGCAAG GTGGAGGAAGTCGAAAGCCAGCCCGAGCAGCTTGATGGGGATGTTCCCATGCCCCCGATC GGAGACCTCGAGCCGCCTCTGGAAATACTCAACCTTCTCATGTCGGAAGAGTCTGTCCGT AATGACACCAATCTCGTCCTCACCTCCACGCCCATCGAGTCGCTTCTCCAATTCGAGCTT CCCCTTATCCGACCTCCTGCACCGCCACTACCACCAGTGAAGGAGTTCGTGTCCAACCCC GTTTTGCACGAGCGCATGCGGAGAAAGAGGGAGAAAGAGAGGAAGTTGGAGATGGAGAGA GAGAAAGAAAAGGAGATGGAGAGAGAGAAAGAAAAGGAGATGGAGAGAGAGAAGGGGAAG AGGCCCAAGTACGACGGGAGTGCAGCGATCAAGCGCAAGCGCCCCTCGACGCTTCGCCCG GCTTCCGCTCGACTCGTACTCGTGCTGGTGCCGCCGCCGCTGCCGCTCCCAGAACTCGGC GTTCCGGAAATCTCGGAAGAGCCCATGTCTCCTGGCAGCCCAGAACGAGAGCCTGAGCCC GAGACGGTGCCCGAAGTCGAGCCCCAAATTGCGTCTGAGCATGAGCTCGTCCCAGAACCG GAACCTATGTTGGATGCTATCGCCGCGGCATCGCCTGCTCGCAGCGTTATGGAAGGGACG GAAGGCGAGCGAAAACACAGCCTAGAGGTGCTTGAGGAGATCCCAGAAGTCCCCGAAGGA AGCCCAGAAATCCTCAAACAGAGCCCAGAAGCATCCAAGGAGAGCCCAGAGGTACTCAAG GACGTTTCCGAGGTTCCTCCAGACGAGGCCATGGATACGTGTGAAGAGCCTTCACCCCGG CGTGCGAAGCGCAAAGCGCCAGAACCAGACCCCGACGAGACGGAAGACGAGTTCATTGAC GCATCGCATCCTCCCAAACCGCCTACGCCGTCTCCAGCGCCGGAACCACGACGAAACCAA GAGCCGCCGCACGCCGAGACGCCCTCGGTTGGCGAGCCCGAGCGGATGGAGGTCGACGAA CCGGAGCGGATCGAAGTTGATGAACCTGAACACGGCGAGTTCGCCGAGCCTGAGCCTGAA CCTGAGCCTGAGCATATCGAGGTGGACGAACCTGAACATATCAACGTGGGCGAGCCTGAG AATGTCTACATGGGCGAACCCGAGCCTGAGCCCATCGACGTGGAGGAAGAGGAACGGCAC GAAGTTACCGAGGTCGCACCTCCTGAAGCTCCCTCTCCAACGGTTCCAACTCCAGAACGC GCAAGCAGTGTTTGCGCATCTCCTGCACCTATGCATCACGACTCTATGTCCCCGGCGGCC GAACCTCGAGCGACTTCGCCTGTTACTGAGCTCCCCACTGTGACTTCCCCTGTGGCTGAA CCCTCAGCTCCTTCACCTACACCACCTCCGGCTCAGCCAGGGCCAGAGCCAGAGCCATCG TCTGAACAGGAACAGGTACATGCACAGGAACACGAGCCCGAAGCTCAGCCTGAACTCGCA GCCCCACAAGCAGAGGAGGCACAAGAAGAGACGCTCCCAGCTGACGACGCAGCAGCAGCA GCAGCAGCAGCAGCAGAGGAGCCTCAGCCTCAGCCACAGCCAGAGGAAAAGGAAGAGGAA GAAGTGGACACCCGCCCCGTCAAAATCATCTGGATCGACGTCATCGACACGCCCGCCATC CGGCGCGAGAAGGCGAAGCAGAAGAGGCTCAAAAGGGAGGCCCGGAAACGGGCAGAGGAG GAGGCCGCCGCCACCGCGCTCGCACCCGAACAGCCGGCTGCGAGG >FGENESH: 4 12 exon (s) 10441 - 14593 1115 aa, chain + MARGVASPAPNALPKVSFVKVTDDATQQATGVADQVALSYGYNGPSVFQQEKHYIRYIEP LESDLAVQVEYDMDEQGENANAIVFCDGCNLAVHQDCYGVPYIPEGQWLCRKCTVSPENP VSGILCPKEGGAFKQTVSGDWVHLLCAIWVPETAVANEGFMELITGVEKISKQRWRLRCS VCDEKHGACIQCTKPSCLTAFHATCARKEKLLMPMKASQGSEAPVLACYCEKHLPLEQLN VREAAIQADSDEGDEMDGHHPTPKSSKSARAYNRMYKPGPPLVPRIIVNRILHYISRIQV RHKQDFVHLVCRYWSLKREARRGTPLLKRLHLEPWTALSGSKQQTDQEKAAKLDLMKGLG DDLERLRTIAEVVRLRERVKQAQSEAVQDVLLQFLFPHEGPLRLAFQKITAHDRQNGYFK TPVSRTEVPDYYDVIKNPMCWDMIDQKLDRHEYLDLAEFKRDINLVLDNATTYNEPGTPY YKTAVRIRMAAQALLAELDGLVHHPPAAMTDPEPLIDGGKVEEVESQPEQLDGDVPMPPI GDLEPPLEILNLLMSEESVRNDTNLVLTSTPIESLLQFELPLIRPPAPPLPPVKEFVSNP VLHERMRRKREKERKLEMEREKEKEMEREKEKEMEREKGKRPKYDGSAAIKRKRPSTLRP ASARLVLVLVPPPLPLPELGVPEISEEPMSPGSPEREPEPETVPEVEPQIASEHELVPEP EPMLDAIAAASPARSVMEGTEGERKHSLEVLEEIPEVPEGSPEILKQSPEASKESPEVLK DVSEVPPDEAMDTCEEPSPRRAKRKAPEPDPDETEDEFIDASHPPKPPTPSPAPEPRRNQ EPPHAETPSVGEPERMEVDEPERIEVDEPEHGEFAEPEPEPEPEHIEVDEPEHINVGEPE NVYMGEPEPEPIDVEEEERHEVTEVAPPEAPSPTVPTPERASSVCASPAPMHHDSMSPAA EPRATSPVTELPTVTSPVAEPSAPSPTPPPAQPGPEPEPSSEQEQVHAQEHEPEAQPELA APQAEEAQEETLPADDAAAAAAAAAEEPQPQPQPEEKEEEEVDTRPVKIIWIDVIDTPAI RREKAKQKRLKREARKRAEEEAAATALAPEQPAAR // FGENESH 2.6 Prediction of potential genes in White genomic DNA Time : Mon Dec 10 15:34:00 2012 Seq name: contig_2 Length of sequence: 8850 Number of predicted genes 2: in +chain 1, in -chain 1. Number of predicted exons 15: in +chain 10, in -chain 5. Positions of predicted genes and exons: Variant 1 from 1, Score:118.523364 G Str Feature Start End Score ORF Len 1 + TSS 3024 -1.40 1 + 1 CDSf 3089 - 3166 9.29 3089 - 3166 78 1 + 2 CDSi 3221 - 3331 9.92 3221 - 3331 111 1 + 3 CDSi 3384 - 3512 3.72 3384 - 3512 129 1 + 4 CDSi 3568 - 3736 11.91 3568 - 3735 168 1 + 5 CDSi 3763 - 3876 1.02 3765 - 3875 111 1 + 6 CDSi 3933 - 4029 5.87 3935 - 4027 93 1 + 7 CDSi 4090 - 4216 4.97 4091 - 4216 126 1 + 8 CDSi 4276 - 4564 16.85 4276 - 4563 288 1 + 9 CDSi 4626 - 4875 24.10 4628 - 4873 246 1 + 10 CDSl 4937 - 5111 0.77 4938 - 5111 174 1 + PolA 5118 -4.33 2 - PolA 5285 -1.73 2 - 1 CDSl 5716 - 6075 15.57 5716 - 6075 360 2 - 2 CDSi 6137 - 6508 21.50 6137 - 6508 372 2 - 3 CDSi 6571 - 6775 8.65 6571 - 6774 204 2 - 4 CDSi 6847 - 7537 14.21 6849 - 7535 687 2 - 5 CDSf 7684 - 7753 -2.52 7685 - 7753 69 2 - TSS 7797 -6.42 Predicted protein(s): >FGENESH:[mRNA] 1 10 exon (s) 3089 - 5111 1539 bp, chain + ATGGACGGCATCGCATGGAAGATTGCACCCCTGTTGTGTCTAGTGGGCCTCCTCGTCCTC CGATGGTACACCCATCCTCTCCGCTCGATACCGACCCTCATGGGGTCTTCCTTTCCGAGC TTGTCTCTATTTACCGCCCTCAGATTCGCGCGCGATCCAAAGCTGCTTCTGAACGAAGGT TACATCAAGCACCAAAATTCCACTTTTAAGCTTCCCCTCCTGGACAAGTGGGTCGTCGTC GTGTGCGGGACGAAACTCATCGAGGACGTGGGGAAGCGCCCTGACGATGAGTTGTCGGCG TACGATGGGATCCGGGAGTTCACTCAGGTCGCGTACACGTCTGGGCCGGAGATGCTAGCG GACTCTGGCCATGAATCTCGAACGATCATCAAGGAGAACCTTACTCGCGGCATGCCGATC TTCGCACCAGAAATCGCAGATGAACTCGAGTGTGTGCTTCAGGAGGGTATCCGTTCCGAA GGTGACGACTGCCCAGCTGACGCCCCAGCACGCACAGATTGGGCAGGGTTGAATCCTTGG GACCTCACGAAACAGGTTCTCGCGCGAACGACTAGTCGTGTATTCGTCGGTCTTCCTCTT TGTCGCGATGAGCGATACTTGTCGATCGTCCACAAGCATGTGAAGGACTTCATGGATACG ATATTAGCCATGAATCTAATCCCACCGTTCCTGAAACCGATTCTCGGATCGAGAGTGAGC AAAGTTCGCGCCAACGTACAGCTCGCCCTCTCGATCTTGCGGCCTATCATCGAGAAGCGC AAGGCCGTGATGAGGGAGTCTGGGGGCGACTGGCCCAACAAACCGAACGACATGCTGCAG TGGATCCTGGACAGGGCGGTCCCTCGGGGAAACTCCGACGAATACGTCGTCGAACGGCTT CTGGGATCCAACTTCGCGGCCATCAACTCCGCCGCGAACGTGTTGACGAATGCCCTGTGC CGTCTCGCGACCTCACCTGAGCCTGTGGCCCTCCTCCGCGAAGAGATCGAGTCGCTGGTC GCCGACGAGGGCTGGACCGCCGGGGCGATCAGCAAGATGTCGAAGCTCGACAGCTTCCTC AAGGAGACCCAGCGGTTCACGGGGGTGGCACTCGCATCGATGATGAAGAAGGCGATGAAG GATGTACTGCTGAGCGACGGCACCTTCGTCCCGAAGGGTACGATCCTCCTCACCGCGCAC AGCCCGGTGCACCGGGACGAGAGGTACTACCCCGACCCCGACGTCTTCGACCCCTTCCGG TTCTCGCGCGAGCGCGAGCGCGAGCGCGACGGAGACGCCGTCAAGCACCAGTTCACGACG TCGTCGGCGACGTACCTCTCCTGGGGATATGGCCCGCATTCCTGCCCGGGGCGTTTCTTC GTGGTCATGGAGATGAAGATGATATTGGCGCACATTGTCGTCCACTACGACTTGAAGCTA GGCGGGGACGGCAGGCCGCCGAAGGAGACTTGTATGGGATTCGCCGTCGCTGCTCCTCGC GACGCCGTGTTGTTGTTCAGGAAGCGAAAATCAGGCTAG >FGENESH: 1 10 exon (s) 3089 - 5111 512 aa, chain + MDGIAWKIAPLLCLVGLLVLRWYTHPLRSIPTLMGSSFPSLSLFTALRFARDPKLLLNEG YIKHQNSTFKLPLLDKWVVVVCGTKLIEDVGKRPDDELSAYDGIREFTQVAYTSGPEMLA DSGHESRTIIKENLTRGMPIFAPEIADELECVLQEGIRSEGDDCPADAPARTDWAGLNPW DLTKQVLARTTSRVFVGLPLCRDERYLSIVHKHVKDFMDTILAMNLIPPFLKPILGSRVS KVRANVQLALSILRPIIEKRKAVMRESGGDWPNKPNDMLQWILDRAVPRGNSDEYVVERL LGSNFAAINSAANVLTNALCRLATSPEPVALLREEIESLVADEGWTAGAISKMSKLDSFL KETQRFTGVALASMMKKAMKDVLLSDGTFVPKGTILLTAHSPVHRDERYYPDPDVFDPFR FSRERERERDGDAVKHQFTTSSATYLSWGYGPHSCPGRFFVVMEMKMILAHIVVHYDLKL GGDGRPPKETCMGFAVAAPRDAVLLFRKRKSG >FGENESH:[mRNA] 2 5 exon (s) 5716 - 7753 1698 bp, chain - ATGACAGCGACGAAGGGCGGCGCGGGATTACGTTACCTGGCACCATCCGAGAACGGCCCT GGAATATGTACACGGGTCAGATGGTCGAGGCACGATAGAAACGCGGTTAGGACCCACCGC CATGACCACAGCGGCCGTGGGAGGAGAAAGGGGAATCCAAGCCCTCGGAAGGCGGTTTGG GCGATAGTTGTGGGAAGGGTGGATCATCAGACAGTCCATAGCACCTTTTACAGGTTCTAC ACCTCGTCCTCCATCTTGAAGCTTGTCGCCGATGGTCCAAAGGCTCGTCGTCGTCGTGAC CGGAGCAAACAGGTGCGAGTCTCTCATTCATCTCCGCTTGTCCCAACGTACGTGCTGAGC CAGAACCTCGGCAGCGGAGTTGGATTCGGAGTTTGCCACCGACTCCTCGTCCAACTTTCT GCCCTCAGTCCCCCCGACGCACGGCCATATTTTGTGCCCAGCGATGCCTCAGCTTCGAAT ACTCATGCTAATACACAGAGACCCTCTTCGTCTAGCGAGGACAAGCCCGCATTTGGTGGG GACCTGACCATCATCATGGCATGCCGTGACGCTGCCCGCGCTGAGAGCGCACGTACGAAG TTGTACGGGCTTCTGGAAAAGCACATCGCCACCCTTCTACCTGGTTCCGAAGCATACCAG TATGCAACCGCATTCCGCTCAGGTTTAAAGCTAGAAGTGGAGATCCTCGACCTGGCCTCC ATGGAGAGCGTGCTGGATTTCGGGAGGAATGTGGCGAGGAAATACACCAATATCTCCCAT CTAGTACTGAATGCTGGCACCGCGACGTACAGCCACTTCGACTACCTACTCTACCAGTAC GACCTTATGCGCTACCCAACCCTCACCGTGACGCACCCGCGCGCCAACATCCAGAAGACC GGAGTACTGAGCAAGGACAACCTGGGATACGCCTGGCAGTGTAACGTATTCGGCCATTAC TGCGTGTACCGCTCGCTCCAGCCCCTCCTCGCTGCCTATGCGCGGTCCTCTGGGCGGCCC GCCCGTGTGATATGGATGTCGTCCATGGACGCGATGCCGTCCTTCGACCCTGTCGACGAC TGGCAGCTCACGAAGACCCGGCACTCCTACGAGGGCGCGAAGTTCCAAGCCGAGTCCATC GCCGCCGAGCTCGAGCAGCTGGGCATCCAAGCGCGCGAGGGAAACCTCCAGTCGCCTTCT CCACCGGACTTCGTCTCCACCAATGGCGAAGTGCACCACTTGATCTCGAGCCCCGGCGTC GTCCCGACGAACATGATGACCCTGCTCGGCATCAAGCTCCCCGGCTACAGAGCGGGCACG ACGGCGGTCTTCTGGCTCACTCGCCTTCTCGGATGCAAGCACGTCCACATGTCCGTGTAC AACGCCGCCGTGGCGACCGTGCACCTCGCGCTCGTGCCCTTGGACTCGATCCCGACCGCG CACACAGCGCGAGATATCCTCCCGACGCACACGAAGTACCCGCCGTGGCACCTGTACCAC AACCTCCAGACCGACACCGTGCAGAGCCTGCGTTTCGGCTCGCGGTCGGACCGCTGGGGG AACGAGTACCCGGGCATCACGGCCGTGCCCGTATGGGAGGAGCACCCGGACATCGGCAAG GAGCTGCTGGACAAGTTCGAACGTCTGTACAGGACGTTCCTGATGGCGATGCCGGACGCT CGAGCTACTTCTTCCTGA >FGENESH: 2 5 exon (s) 5716 - 7753 565 aa, chain - MTATKGGAGLRYLAPSENGPGICTRVRWSRHDRNAVRTHRHDHSGRGRRKGNPSPRKAVW AIVVGRVDHQTVHSTFYRFYTSSSILKLVADGPKARRRRDRSKQVRVSHSSPLVPTYVLS QNLGSGVGFGVCHRLLVQLSALSPPDARPYFVPSDASASNTHANTQRPSSSSEDKPAFGG DLTIIMACRDAARAESARTKLYGLLEKHIATLLPGSEAYQYATAFRSGLKLEVEILDLAS MESVLDFGRNVARKYTNISHLVLNAGTATYSHFDYLLYQYDLMRYPTLTVTHPRANIQKT GVLSKDNLGYAWQCNVFGHYCVYRSLQPLLAAYARSSGRPARVIWMSSMDAMPSFDPVDD WQLTKTRHSYEGAKFQAESIAAELEQLGIQAREGNLQSPSPPDFVSTNGEVHHLISSPGV VPTNMMTLLGIKLPGYRAGTTAVFWLTRLLGCKHVHMSVYNAAVATVHLALVPLDSIPTA HTARDILPTHTKYPPWHLYHNLQTDTVQSLRFGSRSDRWGNEYPGITAVPVWEEHPDIGK ELLDKFERLYRTFLMAMPDARATSS // FGENESH 2.6 Prediction of potential genes in White genomic DNA Time : Mon Dec 10 15:34:00 2012 Seq name: contig_3 Length of sequence: 6139 Number of predicted genes 2: in +chain 1, in -chain 1. Number of predicted exons 14: in +chain 4, in -chain 10. Positions of predicted genes and exons: Variant 1 from 1, Score:109.686804 G Str Feature Start End Score ORF Len 1 + 1 CDSf 252 - 733 9.01 252 - 731 480 1 + 2 CDSi 807 - 1011 6.40 808 - 1011 204 1 + 3 CDSi 1095 - 1451 26.55 1095 - 1451 357 1 + 4 CDSl 1513 - 1872 13.47 1513 - 1872 360 1 + PolA 2167 -2.13 2 - PolA 2499 -4.33 2 - 1 CDSl 2511 - 2685 3.85 2511 - 2684 174 2 - 2 CDSi 2747 - 2990 19.62 2749 - 2988 240 2 - 3 CDSi 3052 - 3340 15.77 3053 - 3340 288 2 - 4 CDSi 3400 - 3483 0.87 3400 - 3483 84 2 - 5 CDSi 3511 - 3526 4.33 3511 - 3525 15 2 - 6 CDSi 3580 - 3676 13.50 3582 - 3674 93 2 - 7 CDSi 3733 - 3816 3.43 3734 - 3814 81 2 - 8 CDSi 3879 - 4041 5.38 3880 - 4041 162 2 - 9 CDSi 4097 - 4225 7.52 4097 - 4225 129 2 - 10 CDSf 4444 - 4521 9.03 4444 - 4521 78 2 - TSS 4547 -1.40 Predicted protein(s): >FGENESH:[mRNA] 1 4 exon (s) 252 - 1872 1404 bp, chain + ATGGTCCAAAGGCTTGTCGTCGTCGTGACCGGAGCAAACAGGTGCGAGTCCCCCACCCAT CTCCGCTCGCCCCAACTGAGCCCGAACCTCCGCAGCGGAGTTGGATTCGGAGTTTGCCAC CGACTCCTTGTCCAGCTTTCTGCCCTCAGTCCCGCCGACGCACGACCGTACTTTGTGCCC AGCGATCCTTCAGCTTCGAATACTCATGCTAATACCCAGAGACCCTCTACGTCTAGCGAG GACAAGCACACATTTGGTGGGGACCTGACTATCATCATGGCGTGCCGTGACGCTGCCCGC GCCGAGAGCGCGCGCACGAAGTTGCACGGGCTTCTGGACAAGCACATCTCCACCCTTCGA CCTGGTTCCAAAGAATACCAGTATGCGACCGAATTCCGCTCAAGTTTAAAGCTAGAGGTG GAGATTCTTGACCTGGCATCCATGGAGAGCGTGCTGGATTTCGGGAGGAACGTGGCGAAG AAGTACAGCAACATCTCCCATCTCGTGTTGAATGCTGGCACCGCGACGTACAGCCATTTC GACTACCTGCTCTACCAGTACGACCTCATGCGCTACCCAACCCTTACCGTGACGCACCCG CGTGCCAACATCCAGAAAACCGGCGTCCTGAGCAAGGACAACCTGGGATACGCCTGGCAG TGTAATGTGTTCGGCCATTACTGCGTACCTCTGCTCGCTGCCTACGCGCGGTCCTCTGGG CGGCCCGCTCGTGTGATATGGATGTCGTCCATGGACGCAATGCCATCCTTCGACCCTGCC GACGACTGGCAGCTCACGAAGACCCGGCACTCCTACGAGGGTGCCAAGTTCCAAGCCGAG TCCATCGCCGCCGAGCTCGAGCAGCTGGGCATCCAAGCGCGCGAGGGAAACCTCCAGTCG CCTTCTCCACCGGACTTCGTCTCCACCGACGGCGAAGTGCACCACTTGATCTCGAGCCCC GGCGTCGTCCCGACGAACATGATGACCCTGCTCGGCATCAA