~/jgg-093-aa/Cufflinks/Treatment1/transcripts.gtf
~/jgg-093-aa/Cufflinks/Treatment2/transcripts.gtf
~/jgg-093-aa/Cufflinks/Treatment3/transcripts.gtf
~/jgg-093-aa/Cufflinks/Treatment4/transcripts.gtf
~/jgg-093-aa/Cufflinks/Treatment5/transcripts.gtf
~/jgg-093-aa/Cufflinks/Treatment6/transcripts.gtf