QUAC_G_SH_Q1485
9477504 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
432438 + 0 supplementary
0 + 0 duplicates
8786519 + 0 mapped (92.71% : N/A)
9045066 + 0 paired in sequencing
4522533 + 0 read1
4522533 + 0 read2
6772084 + 0 properly paired (74.87% : N/A)
8133910 + 0 with itself and mate mapped
220171 + 0 singletons (2.43% : N/A)
1302088 + 0 with mate mapped to a different chr
459133 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1499
9598451 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
381457 + 0 supplementary
0 + 0 duplicates
8974981 + 0 mapped (93.50% : N/A)
9216994 + 0 paired in sequencing
4608497 + 0 read1
4608497 + 0 read2
7256860 + 0 properly paired (78.73% : N/A)
8413006 + 0 with itself and mate mapped
180518 + 0 singletons (1.96% : N/A)
1104326 + 0 with mate mapped to a different chr
387250 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1500
13242282 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
597144 + 0 supplementary
0 + 0 duplicates
12289476 + 0 mapped (92.80% : N/A)
12645138 + 0 paired in sequencing
6322569 + 0 read1
6322569 + 0 read2
9453298 + 0 properly paired (74.76% : N/A)
11390248 + 0 with itself and mate mapped
302084 + 0 singletons (2.39% : N/A)
1847336 + 0 with mate mapped to a different chr
664422 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1501
10306852 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
461534 + 0 supplementary
0 + 0 duplicates
9572435 + 0 mapped (92.87% : N/A)
9845318 + 0 paired in sequencing
4922659 + 0 read1
4922659 + 0 read2
7348032 + 0 properly paired (74.63% : N/A)
8865798 + 0 with itself and mate mapped
245103 + 0 singletons (2.49% : N/A)
1453312 + 0 with mate mapped to a different chr
527192 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1504
9924261 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
442613 + 0 supplementary
0 + 0 duplicates
9288874 + 0 mapped (93.60% : N/A)
9481648 + 0 paired in sequencing
4740824 + 0 read1
4740824 + 0 read2
7220262 + 0 properly paired (76.15% : N/A)
8618686 + 0 with itself and mate mapped
227575 + 0 singletons (2.40% : N/A)
1338300 + 0 with mate mapped to a different chr
478006 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1506
11293252 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
524950 + 0 supplementary
0 + 0 duplicates
10554884 + 0 mapped (93.46% : N/A)
10768302 + 0 paired in sequencing
5384151 + 0 read1
5384151 + 0 read2
8251086 + 0 properly paired (76.62% : N/A)
9801238 + 0 with itself and mate mapped
228696 + 0 singletons (2.12% : N/A)
1468644 + 0 with mate mapped to a different chr
510661 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1507
12438740 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
539264 + 0 supplementary
0 + 0 duplicates
11577181 + 0 mapped (93.07% : N/A)
11899476 + 0 paired in sequencing
5949738 + 0 read1
5949738 + 0 read2
9030478 + 0 properly paired (75.89% : N/A)
10764154 + 0 with itself and mate mapped
273763 + 0 singletons (2.30% : N/A)
1655190 + 0 with mate mapped to a different chr
593825 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1508
11633903 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
513519 + 0 supplementary
0 + 0 duplicates
10818024 + 0 mapped (92.99% : N/A)
11120384 + 0 paired in sequencing
5560192 + 0 read1
5560192 + 0 read2
8478760 + 0 properly paired (76.25% : N/A)
10040834 + 0 with itself and mate mapped
263671 + 0 singletons (2.37% : N/A)
1492532 + 0 with mate mapped to a different chr
521858 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1513
12307275 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
597695 + 0 supplementary
0 + 0 duplicates
11511603 + 0 mapped (93.53% : N/A)
11709580 + 0 paired in sequencing
5854790 + 0 read1
5854790 + 0 read2
8852812 + 0 properly paired (75.60% : N/A)
10645960 + 0 with itself and mate mapped
267948 + 0 singletons (2.29% : N/A)
1709636 + 0 with mate mapped to a different chr
612631 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1514
10002595 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
445287 + 0 supplementary
0 + 0 duplicates
9232655 + 0 mapped (92.30% : N/A)
9557308 + 0 paired in sequencing
4778654 + 0 read1
4778654 + 0 read2
7156582 + 0 properly paired (74.88% : N/A)
8549030 + 0 with itself and mate mapped
238338 + 0 singletons (2.49% : N/A)
1335256 + 0 with mate mapped to a different chr
464917 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1515
13890438 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
677182 + 0 supplementary
0 + 0 duplicates
12953061 + 0 mapped (93.25% : N/A)
13213256 + 0 paired in sequencing
6606628 + 0 read1
6606628 + 0 read2
9852448 + 0 properly paired (74.56% : N/A)
11956366 + 0 with itself and mate mapped
319513 + 0 singletons (2.42% : N/A)
2013340 + 0 with mate mapped to a different chr
715814 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1516
13455102 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
661058 + 0 supplementary
0 + 0 duplicates
12562098 + 0 mapped (93.36% : N/A)
12794044 + 0 paired in sequencing
6397022 + 0 read1
6397022 + 0 read2
9610126 + 0 properly paired (75.11% : N/A)
11606532 + 0 with itself and mate mapped
294508 + 0 singletons (2.30% : N/A)
1907784 + 0 with mate mapped to a different chr
673959 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1517
12979725 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
622187 + 0 supplementary
0 + 0 duplicates
12065546 + 0 mapped (92.96% : N/A)
12357538 + 0 paired in sequencing
6178769 + 0 read1
6178769 + 0 read2
9222268 + 0 properly paired (74.63% : N/A)
11129750 + 0 with itself and mate mapped
313609 + 0 singletons (2.54% : N/A)
1824050 + 0 with mate mapped to a different chr
640732 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1518
10684621 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
487269 + 0 supplementary
0 + 0 duplicates
10006815 + 0 mapped (93.66% : N/A)
10197352 + 0 paired in sequencing
5098676 + 0 read1
5098676 + 0 read2
7861768 + 0 properly paired (77.10% : N/A)
9307922 + 0 with itself and mate mapped
211624 + 0 singletons (2.08% : N/A)
1380138 + 0 with mate mapped to a different chr
488277 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1519
13294034 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
605472 + 0 supplementary
0 + 0 duplicates
12099654 + 0 mapped (91.02% : N/A)
12688562 + 0 paired in sequencing
6344281 + 0 read1
6344281 + 0 read2
9192434 + 0 properly paired (72.45% : N/A)
11151792 + 0 with itself and mate mapped
342390 + 0 singletons (2.70% : N/A)
1883086 + 0 with mate mapped to a different chr
668018 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1520
12024690 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
554954 + 0 supplementary
0 + 0 duplicates
11165507 + 0 mapped (92.85% : N/A)
11469736 + 0 paired in sequencing
5734868 + 0 read1
5734868 + 0 read2
8677116 + 0 properly paired (75.65% : N/A)
10351116 + 0 with itself and mate mapped
259437 + 0 singletons (2.26% : N/A)
1601916 + 0 with mate mapped to a different chr
563606 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1523
13206295 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
598267 + 0 supplementary
0 + 0 duplicates
12314174 + 0 mapped (93.24% : N/A)
12608028 + 0 paired in sequencing
6304014 + 0 read1
6304014 + 0 read2
9493464 + 0 properly paired (75.30% : N/A)
11409628 + 0 with itself and mate mapped
306279 + 0 singletons (2.43% : N/A)
1837012 + 0 with mate mapped to a different chr
652512 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1525
9391002 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
415714 + 0 supplementary
0 + 0 duplicates
8770668 + 0 mapped (93.39% : N/A)
8975288 + 0 paired in sequencing
4487644 + 0 read1
4487644 + 0 read2
6765658 + 0 properly paired (75.38% : N/A)
8136950 + 0 with itself and mate mapped
218004 + 0 singletons (2.43% : N/A)
1311942 + 0 with mate mapped to a different chr
465732 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1526
11021034 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
453194 + 0 supplementary
0 + 0 duplicates
10065738 + 0 mapped (91.33% : N/A)
10567840 + 0 paired in sequencing
5283920 + 0 read1
5283920 + 0 read2
8047826 + 0 properly paired (76.15% : N/A)
9398416 + 0 with itself and mate mapped
214128 + 0 singletons (2.03% : N/A)
1290294 + 0 with mate mapped to a different chr
444992 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1528
10535747 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
475063 + 0 supplementary
0 + 0 duplicates
9764899 + 0 mapped (92.68% : N/A)
10060684 + 0 paired in sequencing
5030342 + 0 read1
5030342 + 0 read2
7526836 + 0 properly paired (74.81% : N/A)
9029544 + 0 with itself and mate mapped
260292 + 0 singletons (2.59% : N/A)
1444778 + 0 with mate mapped to a different chr
511435 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1531
11493818 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
521664 + 0 supplementary
0 + 0 duplicates
10681955 + 0 mapped (92.94% : N/A)
10972154 + 0 paired in sequencing
5486077 + 0 read1
5486077 + 0 read2
8224990 + 0 properly paired (74.96% : N/A)
9877024 + 0 with itself and mate mapped
283267 + 0 singletons (2.58% : N/A)
1577108 + 0 with mate mapped to a different chr
556818 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1536
11708043 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
515185 + 0 supplementary
0 + 0 duplicates
10892866 + 0 mapped (93.04% : N/A)
11192858 + 0 paired in sequencing
5596429 + 0 read1
5596429 + 0 read2
8602256 + 0 properly paired (76.85% : N/A)
10129410 + 0 with itself and mate mapped
248271 + 0 singletons (2.22% : N/A)
1459408 + 0 with mate mapped to a different chr
505710 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1550
12649803 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
573283 + 0 supplementary
0 + 0 duplicates
11784347 + 0 mapped (93.16% : N/A)
12076520 + 0 paired in sequencing
6038260 + 0 read1
6038260 + 0 read2
9049470 + 0 properly paired (74.93% : N/A)
10903180 + 0 with itself and mate mapped
307884 + 0 singletons (2.55% : N/A)
1770514 + 0 with mate mapped to a different chr
635905 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1550_rep
11326537 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
498257 + 0 supplementary
0 + 0 duplicates
10534246 + 0 mapped (93.01% : N/A)
10828280 + 0 paired in sequencing
5414140 + 0 read1
5414140 + 0 read2
8147464 + 0 properly paired (75.24% : N/A)
9754664 + 0 with itself and mate mapped
281325 + 0 singletons (2.60% : N/A)
1540444 + 0 with mate mapped to a different chr
551638 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1551
8933473 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
358115 + 0 supplementary
0 + 0 duplicates
8243324 + 0 mapped (92.27% : N/A)
8575358 + 0 paired in sequencing
4287679 + 0 read1
4287679 + 0 read2
6663226 + 0 properly paired (77.70% : N/A)
7702698 + 0 with itself and mate mapped
182511 + 0 singletons (2.13% : N/A)
999210 + 0 with mate mapped to a different chr
342873 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1553
10289975 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
454023 + 0 supplementary
0 + 0 duplicates
9577642 + 0 mapped (93.08% : N/A)
9835952 + 0 paired in sequencing
4917976 + 0 read1
4917976 + 0 read2
7543282 + 0 properly paired (76.69% : N/A)
8888980 + 0 with itself and mate mapped
234639 + 0 singletons (2.39% : N/A)
1284450 + 0 with mate mapped to a different chr
445449 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1555
12274098 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
573424 + 0 supplementary
0 + 0 duplicates
11315040 + 0 mapped (92.19% : N/A)
11700674 + 0 paired in sequencing
5850337 + 0 read1
5850337 + 0 read2
8722276 + 0 properly paired (74.55% : N/A)
10465778 + 0 with itself and mate mapped
275838 + 0 singletons (2.36% : N/A)
1658322 + 0 with mate mapped to a different chr
584699 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1556
10071227 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
476527 + 0 supplementary
0 + 0 duplicates
9360844 + 0 mapped (92.95% : N/A)
9594700 + 0 paired in sequencing
4797350 + 0 read1
4797350 + 0 read2
7208488 + 0 properly paired (75.13% : N/A)
8670220 + 0 with itself and mate mapped
214097 + 0 singletons (2.23% : N/A)
1390112 + 0 with mate mapped to a different chr
496305 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1559
13067485 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
579449 + 0 supplementary
0 + 0 duplicates
11949459 + 0 mapped (91.44% : N/A)
12488036 + 0 paired in sequencing
6244018 + 0 read1
6244018 + 0 read2
9226512 + 0 properly paired (73.88% : N/A)
11068100 + 0 with itself and mate mapped
301910 + 0 singletons (2.42% : N/A)
1758788 + 0 with mate mapped to a different chr
631664 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1563
12614848 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
587752 + 0 supplementary
0 + 0 duplicates
11771346 + 0 mapped (93.31% : N/A)
12027096 + 0 paired in sequencing
6013548 + 0 read1
6013548 + 0 read2
8972926 + 0 properly paired (74.61% : N/A)
10894644 + 0 with itself and mate mapped
288950 + 0 singletons (2.40% : N/A)
1827962 + 0 with mate mapped to a different chr
656866 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1565
9638873 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
395899 + 0 supplementary
0 + 0 duplicates
8879414 + 0 mapped (92.12% : N/A)
9242974 + 0 paired in sequencing
4621487 + 0 read1
4621487 + 0 read2
6993908 + 0 properly paired (75.67% : N/A)
8251872 + 0 with itself and mate mapped
231643 + 0 singletons (2.51% : N/A)
1205638 + 0 with mate mapped to a different chr
424254 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1566
13421659 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
590861 + 0 supplementary
0 + 0 duplicates
12411832 + 0 mapped (92.48% : N/A)
12830798 + 0 paired in sequencing
6415399 + 0 read1
6415399 + 0 read2
9504338 + 0 properly paired (74.07% : N/A)
11479550 + 0 with itself and mate mapped
341421 + 0 singletons (2.66% : N/A)
1887388 + 0 with mate mapped to a different chr
672520 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1569
11943663 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
547873 + 0 supplementary
0 + 0 duplicates
11127493 + 0 mapped (93.17% : N/A)
11395790 + 0 paired in sequencing
5697895 + 0 read1
5697895 + 0 read2
8712018 + 0 properly paired (76.45% : N/A)
10323008 + 0 with itself and mate mapped
256612 + 0 singletons (2.25% : N/A)
1535856 + 0 with mate mapped to a different chr
536872 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1574
7467946 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
325070 + 0 supplementary
0 + 0 duplicates
6963835 + 0 mapped (93.25% : N/A)
7142876 + 0 paired in sequencing
3571438 + 0 read1
3571438 + 0 read2
5491710 + 0 properly paired (76.88% : N/A)
6474724 + 0 with itself and mate mapped
164041 + 0 singletons (2.30% : N/A)
940126 + 0 with mate mapped to a different chr
324993 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1576
11036298 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
498074 + 0 supplementary
0 + 0 duplicates
10070912 + 0 mapped (91.25% : N/A)
10538224 + 0 paired in sequencing
5269112 + 0 read1
5269112 + 0 read2
7804490 + 0 properly paired (74.06% : N/A)
9337046 + 0 with itself and mate mapped
235792 + 0 singletons (2.24% : N/A)
1462916 + 0 with mate mapped to a different chr
519377 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1577
14208794 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
643706 + 0 supplementary
0 + 0 duplicates
13209391 + 0 mapped (92.97% : N/A)
13565088 + 0 paired in sequencing
6782544 + 0 read1
6782544 + 0 read2
10384960 + 0 properly paired (76.56% : N/A)
12254220 + 0 with itself and mate mapped
311465 + 0 singletons (2.30% : N/A)
1778504 + 0 with mate mapped to a different chr
618404 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_DUP_SH_Q1577
12010050 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
548096 + 0 supplementary
0 + 0 duplicates
11133724 + 0 mapped (92.70% : N/A)
11461954 + 0 paired in sequencing
5730977 + 0 read1
5730977 + 0 read2
8629602 + 0 properly paired (75.29% : N/A)
10308580 + 0 with itself and mate mapped
277048 + 0 singletons (2.42% : N/A)
1608352 + 0 with mate mapped to a different chr
571850 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1588
9267741 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
397287 + 0 supplementary
0 + 0 duplicates
8479079 + 0 mapped (91.49% : N/A)
8870454 + 0 paired in sequencing
4435227 + 0 read1
4435227 + 0 read2
6475880 + 0 properly paired (73.01% : N/A)
7845478 + 0 with itself and mate mapped
236314 + 0 singletons (2.66% : N/A)
1309672 + 0 with mate mapped to a different chr
462511 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1590
12617888 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
564828 + 0 supplementary
0 + 0 duplicates
11683325 + 0 mapped (92.59% : N/A)
12053060 + 0 paired in sequencing
6026530 + 0 read1
6026530 + 0 read2
8979128 + 0 properly paired (74.50% : N/A)
10827962 + 0 with itself and mate mapped
290535 + 0 singletons (2.41% : N/A)
1764256 + 0 with mate mapped to a different chr
625507 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1592
8557434 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
368732 + 0 supplementary
0 + 0 duplicates
7822713 + 0 mapped (91.41% : N/A)
8188702 + 0 paired in sequencing
4094351 + 0 read1
4094351 + 0 read2
5990740 + 0 properly paired (73.16% : N/A)
7241748 + 0 with itself and mate mapped
212233 + 0 singletons (2.59% : N/A)
1198336 + 0 with mate mapped to a different chr
428989 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1615
12704256 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
566926 + 0 supplementary
0 + 0 duplicates
11831982 + 0 mapped (93.13% : N/A)
12137330 + 0 paired in sequencing
6068665 + 0 read1
6068665 + 0 read2
9091768 + 0 properly paired (74.91% : N/A)
10959800 + 0 with itself and mate mapped
305256 + 0 singletons (2.52% : N/A)
1788400 + 0 with mate mapped to a different chr
644530 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1618
14075046 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
618500 + 0 supplementary
0 + 0 duplicates
12975469 + 0 mapped (92.19% : N/A)
13456546 + 0 paired in sequencing
6728273 + 0 read1
6728273 + 0 read2
10255004 + 0 properly paired (76.21% : N/A)
12077154 + 0 with itself and mate mapped
279815 + 0 singletons (2.08% : N/A)
1739792 + 0 with mate mapped to a different chr
615504 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1621
10079365 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
442283 + 0 supplementary
0 + 0 duplicates
9363171 + 0 mapped (92.89% : N/A)
9637082 + 0 paired in sequencing
4818541 + 0 read1
4818541 + 0 read2
7290126 + 0 properly paired (75.65% : N/A)
8683190 + 0 with itself and mate mapped
237698 + 0 singletons (2.47% : N/A)
1331644 + 0 with mate mapped to a different chr
470230 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1628
13409220 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
614870 + 0 supplementary
0 + 0 duplicates
12371659 + 0 mapped (92.26% : N/A)
12794350 + 0 paired in sequencing
6397175 + 0 read1
6397175 + 0 read2
9582288 + 0 properly paired (74.89% : N/A)
11445922 + 0 with itself and mate mapped
310867 + 0 singletons (2.43% : N/A)
1772018 + 0 with mate mapped to a different chr
631264 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1632
14344206 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
646138 + 0 supplementary
0 + 0 duplicates
13329881 + 0 mapped (92.93% : N/A)
13698068 + 0 paired in sequencing
6849034 + 0 read1
6849034 + 0 read2
10282910 + 0 properly paired (75.07% : N/A)
12346084 + 0 with itself and mate mapped
337659 + 0 singletons (2.47% : N/A)
1970984 + 0 with mate mapped to a different chr
691011 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1668
8871940 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
385940 + 0 supplementary
0 + 0 duplicates
8202792 + 0 mapped (92.46% : N/A)
8486000 + 0 paired in sequencing
4243000 + 0 read1
4243000 + 0 read2
6293912 + 0 properly paired (74.17% : N/A)
7585650 + 0 with itself and mate mapped
231202 + 0 singletons (2.72% : N/A)
1237420 + 0 with mate mapped to a different chr
431613 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1671
13428095 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
618617 + 0 supplementary
0 + 0 duplicates
12568254 + 0 mapped (93.60% : N/A)
12809478 + 0 paired in sequencing
6404739 + 0 read1
6404739 + 0 read2
9773678 + 0 properly paired (76.30% : N/A)
11658878 + 0 with itself and mate mapped
290759 + 0 singletons (2.27% : N/A)
1802720 + 0 with mate mapped to a different chr
636583 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1673
13543914 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
605688 + 0 supplementary
0 + 0 duplicates
12654427 + 0 mapped (93.43% : N/A)
12938226 + 0 paired in sequencing
6469113 + 0 read1
6469113 + 0 read2
9838070 + 0 properly paired (76.04% : N/A)
11744382 + 0 with itself and mate mapped
304357 + 0 singletons (2.35% : N/A)
1818094 + 0 with mate mapped to a different chr
641263 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1690
10841631 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
473405 + 0 supplementary
0 + 0 duplicates
10067363 + 0 mapped (92.86% : N/A)
10368226 + 0 paired in sequencing
5184113 + 0 read1
5184113 + 0 read2
7848618 + 0 properly paired (75.70% : N/A)
9342972 + 0 with itself and mate mapped
250986 + 0 singletons (2.42% : N/A)
1430604 + 0 with mate mapped to a different chr
501462 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1692
14886374 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
669788 + 0 supplementary
0 + 0 duplicates
13877636 + 0 mapped (93.22% : N/A)
14216586 + 0 paired in sequencing
7108293 + 0 read1
7108293 + 0 read2
10734544 + 0 properly paired (75.51% : N/A)
12840554 + 0 with itself and mate mapped
367294 + 0 singletons (2.58% : N/A)
2013114 + 0 with mate mapped to a different chr
716180 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1699
2506375 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
114395 + 0 supplementary
0 + 0 duplicates
2348661 + 0 mapped (93.71% : N/A)
2391980 + 0 paired in sequencing
1195990 + 0 read1
1195990 + 0 read2
1709158 + 0 properly paired (71.45% : N/A)
2167394 + 0 with itself and mate mapped
66872 + 0 singletons (2.80% : N/A)
437940 + 0 with mate mapped to a different chr
162167 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1716
12164406 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
565854 + 0 supplementary
0 + 0 duplicates
11345285 + 0 mapped (93.27% : N/A)
11598552 + 0 paired in sequencing
5799276 + 0 read1
5799276 + 0 read2
8776034 + 0 properly paired (75.66% : N/A)
10503622 + 0 with itself and mate mapped
275809 + 0 singletons (2.38% : N/A)
1654468 + 0 with mate mapped to a different chr
582497 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1719
11789969 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
522269 + 0 supplementary
0 + 0 duplicates
10849485 + 0 mapped (92.02% : N/A)
11267700 + 0 paired in sequencing
5633850 + 0 read1
5633850 + 0 read2
8425846 + 0 properly paired (74.78% : N/A)
10075728 + 0 with itself and mate mapped
251488 + 0 singletons (2.23% : N/A)
1577850 + 0 with mate mapped to a different chr
551261 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1722
10449776 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
457146 + 0 supplementary
0 + 0 duplicates
9454432 + 0 mapped (90.47% : N/A)
9992630 + 0 paired in sequencing
4996315 + 0 read1
4996315 + 0 read2
7276558 + 0 properly paired (72.82% : N/A)
8748152 + 0 with itself and mate mapped
249134 + 0 singletons (2.49% : N/A)
1414566 + 0 with mate mapped to a different chr
500597 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1727
11064327 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
232253 + 0 supplementary
0 + 0 duplicates
10948958 + 0 mapped (98.96% : N/A)
10832074 + 0 paired in sequencing
5416037 + 0 read1
5416037 + 0 read2
9769338 + 0 properly paired (90.19% : N/A)
10658334 + 0 with itself and mate mapped
58371 + 0 singletons (0.54% : N/A)
837728 + 0 with mate mapped to a different chr
330042 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1728
15113225 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
346729 + 0 supplementary
0 + 0 duplicates
14935796 + 0 mapped (98.83% : N/A)
14766496 + 0 paired in sequencing
7383248 + 0 read1
7383248 + 0 read2
13126230 + 0 properly paired (88.89% : N/A)
14512566 + 0 with itself and mate mapped
76501 + 0 singletons (0.52% : N/A)
1307168 + 0 with mate mapped to a different chr
513213 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1730
12443271 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
581501 + 0 supplementary
0 + 0 duplicates
11189361 + 0 mapped (89.92% : N/A)
11861770 + 0 paired in sequencing
5930885 + 0 read1
5930885 + 0 read2
8652058 + 0 properly paired (72.94% : N/A)
10363524 + 0 with itself and mate mapped
244336 + 0 singletons (2.06% : N/A)
1635106 + 0 with mate mapped to a different chr
579573 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q1832
12514031 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
536815 + 0 supplementary
0 + 0 duplicates
11481698 + 0 mapped (91.75% : N/A)
11977216 + 0 paired in sequencing
5988608 + 0 read1
5988608 + 0 read2
9021656 + 0 properly paired (75.32% : N/A)
10676382 + 0 with itself and mate mapped
268501 + 0 singletons (2.24% : N/A)
1580856 + 0 with mate mapped to a different chr
546870 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2021
9135567 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
397895 + 0 supplementary
0 + 0 duplicates
8308503 + 0 mapped (90.95% : N/A)
8737672 + 0 paired in sequencing
4368836 + 0 read1
4368836 + 0 read2
6526432 + 0 properly paired (74.69% : N/A)
7730404 + 0 with itself and mate mapped
180204 + 0 singletons (2.06% : N/A)
1149094 + 0 with mate mapped to a different chr
398555 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2025
12018552 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
527928 + 0 supplementary
0 + 0 duplicates
11154111 + 0 mapped (92.81% : N/A)
11490624 + 0 paired in sequencing
5745312 + 0 read1
5745312 + 0 read2
8703908 + 0 properly paired (75.75% : N/A)
10361978 + 0 with itself and mate mapped
264205 + 0 singletons (2.30% : N/A)
1588232 + 0 with mate mapped to a different chr
554088 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2026
12763076 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
570762 + 0 supplementary
0 + 0 duplicates
11709101 + 0 mapped (91.74% : N/A)
12192314 + 0 paired in sequencing
6096157 + 0 read1
6096157 + 0 read2
9098474 + 0 properly paired (74.62% : N/A)
10853730 + 0 with itself and mate mapped
284609 + 0 singletons (2.33% : N/A)
1669632 + 0 with mate mapped to a different chr
584494 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2033
10329811 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
456323 + 0 supplementary
0 + 0 duplicates
9640744 + 0 mapped (93.33% : N/A)
9873488 + 0 paired in sequencing
4936744 + 0 read1
4936744 + 0 read2
7599844 + 0 properly paired (76.97% : N/A)
8994342 + 0 with itself and mate mapped
190079 + 0 singletons (1.93% : N/A)
1327910 + 0 with mate mapped to a different chr
467528 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2034
14435520 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
664674 + 0 supplementary
0 + 0 duplicates
13364027 + 0 mapped (92.58% : N/A)
13770846 + 0 paired in sequencing
6885423 + 0 read1
6885423 + 0 read2
10242548 + 0 properly paired (74.38% : N/A)
12373500 + 0 with itself and mate mapped
325853 + 0 singletons (2.37% : N/A)
2026410 + 0 with mate mapped to a different chr
728079 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2037
12129170 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
514848 + 0 supplementary
0 + 0 duplicates
11069557 + 0 mapped (91.26% : N/A)
11614322 + 0 paired in sequencing
5807161 + 0 read1
5807161 + 0 read2
8776546 + 0 properly paired (75.57% : N/A)
10316820 + 0 with itself and mate mapped
237889 + 0 singletons (2.05% : N/A)
1470854 + 0 with mate mapped to a different chr
522921 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2039
9069543 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
392897 + 0 supplementary
0 + 0 duplicates
8232413 + 0 mapped (90.77% : N/A)
8676646 + 0 paired in sequencing
4338323 + 0 read1
4338323 + 0 read2
6412342 + 0 properly paired (73.90% : N/A)
7641884 + 0 with itself and mate mapped
197632 + 0 singletons (2.28% : N/A)
1177766 + 0 with mate mapped to a different chr
413600 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2045
10938582 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
488388 + 0 supplementary
0 + 0 duplicates
10064348 + 0 mapped (92.01% : N/A)
10450194 + 0 paired in sequencing
5225097 + 0 read1
5225097 + 0 read2
7868026 + 0 properly paired (75.29% : N/A)
9358990 + 0 with itself and mate mapped
216970 + 0 singletons (2.08% : N/A)
1421924 + 0 with mate mapped to a different chr
506509 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2046
13930428 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
599690 + 0 supplementary
0 + 0 duplicates
12775550 + 0 mapped (91.71% : N/A)
13330738 + 0 paired in sequencing
6665369 + 0 read1
6665369 + 0 read2
9821604 + 0 properly paired (73.68% : N/A)
11837734 + 0 with itself and mate mapped
338126 + 0 singletons (2.54% : N/A)
1928850 + 0 with mate mapped to a different chr
706059 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2047
11067204 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
471320 + 0 supplementary
0 + 0 duplicates
10163066 + 0 mapped (91.83% : N/A)
10595884 + 0 paired in sequencing
5297942 + 0 read1
5297942 + 0 read2
7978200 + 0 properly paired (75.30% : N/A)
9450184 + 0 with itself and mate mapped
241562 + 0 singletons (2.28% : N/A)
1407818 + 0 with mate mapped to a different chr
501704 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2048
9542399 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
423643 + 0 supplementary
0 + 0 duplicates
8740246 + 0 mapped (91.59% : N/A)
9118756 + 0 paired in sequencing
4559378 + 0 read1
4559378 + 0 read2
6658744 + 0 properly paired (73.02% : N/A)
8073960 + 0 with itself and mate mapped
242643 + 0 singletons (2.66% : N/A)
1350818 + 0 with mate mapped to a different chr
478125 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2188
12752819 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
604889 + 0 supplementary
0 + 0 duplicates
11707088 + 0 mapped (91.80% : N/A)
12147930 + 0 paired in sequencing
6073965 + 0 read1
6073965 + 0 read2
9051588 + 0 properly paired (74.51% : N/A)
10853766 + 0 with itself and mate mapped
248433 + 0 singletons (2.05% : N/A)
1715224 + 0 with mate mapped to a different chr
598892 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2190
9195130 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
414218 + 0 supplementary
0 + 0 duplicates
8534924 + 0 mapped (92.82% : N/A)
8780912 + 0 paired in sequencing
4390456 + 0 read1
4390456 + 0 read2
6703002 + 0 properly paired (76.34% : N/A)
7938914 + 0 with itself and mate mapped
181792 + 0 singletons (2.07% : N/A)
1182090 + 0 with mate mapped to a different chr
416922 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2191
9850565 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
450829 + 0 supplementary
0 + 0 duplicates
8999441 + 0 mapped (91.36% : N/A)
9399736 + 0 paired in sequencing
4699868 + 0 read1
4699868 + 0 read2
7002784 + 0 properly paired (74.50% : N/A)
8347086 + 0 with itself and mate mapped
201526 + 0 singletons (2.14% : N/A)
1283058 + 0 with mate mapped to a different chr
455988 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2199
10163770 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
450180 + 0 supplementary
0 + 0 duplicates
9453592 + 0 mapped (93.01% : N/A)
9713590 + 0 paired in sequencing
4856795 + 0 read1
4856795 + 0 read2
7336344 + 0 properly paired (75.53% : N/A)
8765612 + 0 with itself and mate mapped
237800 + 0 singletons (2.45% : N/A)
1365330 + 0 with mate mapped to a different chr
488216 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2200
12064695 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
548291 + 0 supplementary
0 + 0 duplicates
11214313 + 0 mapped (92.95% : N/A)
11516404 + 0 paired in sequencing
5758202 + 0 read1
5758202 + 0 read2
8616532 + 0 properly paired (74.82% : N/A)
10373200 + 0 with itself and mate mapped
292822 + 0 singletons (2.54% : N/A)
1678466 + 0 with mate mapped to a different chr
596265 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2201
12101282 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
568638 + 0 supplementary
0 + 0 duplicates
11311896 + 0 mapped (93.48% : N/A)
11532644 + 0 paired in sequencing
5766322 + 0 read1
5766322 + 0 read2
8710368 + 0 properly paired (75.53% : N/A)
10464578 + 0 with itself and mate mapped
278680 + 0 singletons (2.42% : N/A)
1673962 + 0 with mate mapped to a different chr
598832 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2202
12315515 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
563905 + 0 supplementary
0 + 0 duplicates
11528014 + 0 mapped (93.61% : N/A)
11751610 + 0 paired in sequencing
5875805 + 0 read1
5875805 + 0 read2
9025084 + 0 properly paired (76.80% : N/A)
10709138 + 0 with itself and mate mapped
254971 + 0 singletons (2.17% : N/A)
1600714 + 0 with mate mapped to a different chr
568600 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2203
13136397 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
608371 + 0 supplementary
0 + 0 duplicates
12256050 + 0 mapped (93.30% : N/A)
12528026 + 0 paired in sequencing
6264013 + 0 read1
6264013 + 0 read2
9462448 + 0 properly paired (75.53% : N/A)
11363832 + 0 with itself and mate mapped
283847 + 0 singletons (2.27% : N/A)
1817826 + 0 with mate mapped to a different chr
644374 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2204
14172923 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
682005 + 0 supplementary
0 + 0 duplicates
13227262 + 0 mapped (93.33% : N/A)
13490918 + 0 paired in sequencing
6745459 + 0 read1
6745459 + 0 read2
10234016 + 0 properly paired (75.86% : N/A)
12247368 + 0 with itself and mate mapped
297889 + 0 singletons (2.21% : N/A)
1915274 + 0 with mate mapped to a different chr
673834 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_DUP_SH_Q2204
13497380 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
637842 + 0 supplementary
0 + 0 duplicates
12506215 + 0 mapped (92.66% : N/A)
12859538 + 0 paired in sequencing
6429769 + 0 read1
6429769 + 0 read2
9409240 + 0 properly paired (73.17% : N/A)
11538788 + 0 with itself and mate mapped
329585 + 0 singletons (2.56% : N/A)
2035070 + 0 with mate mapped to a different chr
731035 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2205
12564760 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
556204 + 0 supplementary
0 + 0 duplicates
11696081 + 0 mapped (93.09% : N/A)
12008556 + 0 paired in sequencing
6004278 + 0 read1
6004278 + 0 read2
9091578 + 0 properly paired (75.71% : N/A)
10857724 + 0 with itself and mate mapped
282153 + 0 singletons (2.35% : N/A)
1687312 + 0 with mate mapped to a different chr
593756 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2206
11236692 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
516394 + 0 supplementary
0 + 0 duplicates
10475314 + 0 mapped (93.22% : N/A)
10720298 + 0 paired in sequencing
5360149 + 0 read1
5360149 + 0 read2
8009844 + 0 properly paired (74.72% : N/A)
9700140 + 0 with itself and mate mapped
258780 + 0 singletons (2.41% : N/A)
1616462 + 0 with mate mapped to a different chr
581783 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2207
11386421 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
491633 + 0 supplementary
0 + 0 duplicates
10521771 + 0 mapped (92.41% : N/A)
10894788 + 0 paired in sequencing
5447394 + 0 read1
5447394 + 0 read2
8176560 + 0 properly paired (75.05% : N/A)
9755454 + 0 with itself and mate mapped
274684 + 0 singletons (2.52% : N/A)
1511680 + 0 with mate mapped to a different chr
541184 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2208
12432786 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
540468 + 0 supplementary
0 + 0 duplicates
11591209 + 0 mapped (93.23% : N/A)
11892318 + 0 paired in sequencing
5946159 + 0 read1
5946159 + 0 read2
9144236 + 0 properly paired (76.89% : N/A)
10789376 + 0 with itself and mate mapped
261365 + 0 singletons (2.20% : N/A)
1569792 + 0 with mate mapped to a different chr
551553 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2209
12335344 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
555320 + 0 supplementary
0 + 0 duplicates
11362976 + 0 mapped (92.12% : N/A)
11780024 + 0 paired in sequencing
5890012 + 0 read1
5890012 + 0 read2
8884902 + 0 properly paired (75.42% : N/A)
10544392 + 0 with itself and mate mapped
263264 + 0 singletons (2.23% : N/A)
1578412 + 0 with mate mapped to a different chr
558781 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2210
14202856 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
631622 + 0 supplementary
0 + 0 duplicates
12943286 + 0 mapped (91.13% : N/A)
13571234 + 0 paired in sequencing
6785617 + 0 read1
6785617 + 0 read2
10148370 + 0 properly paired (74.78% : N/A)
12024044 + 0 with itself and mate mapped
287620 + 0 singletons (2.12% : N/A)
1782990 + 0 with mate mapped to a different chr
625728 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2211
13749066 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
587476 + 0 supplementary
0 + 0 duplicates
12723607 + 0 mapped (92.54% : N/A)
13161590 + 0 paired in sequencing
6580795 + 0 read1
6580795 + 0 read2
9933778 + 0 properly paired (75.48% : N/A)
11827702 + 0 with itself and mate mapped
308429 + 0 singletons (2.34% : N/A)
1812804 + 0 with mate mapped to a different chr
640452 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2212
7495669 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
334533 + 0 supplementary
0 + 0 duplicates
6533048 + 0 mapped (87.16% : N/A)
7161136 + 0 paired in sequencing
3580568 + 0 read1
3580568 + 0 read2
5095666 + 0 properly paired (71.16% : N/A)
6064258 + 0 with itself and mate mapped
134257 + 0 singletons (1.87% : N/A)
926162 + 0 with mate mapped to a different chr
333296 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2213
12612459 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
590071 + 0 supplementary
0 + 0 duplicates
11753239 + 0 mapped (93.19% : N/A)
12022388 + 0 paired in sequencing
6011194 + 0 read1
6011194 + 0 read2
9047876 + 0 properly paired (75.26% : N/A)
10887084 + 0 with itself and mate mapped
276084 + 0 singletons (2.30% : N/A)
1755644 + 0 with mate mapped to a different chr
608726 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2214
10362764 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
478056 + 0 supplementary
0 + 0 duplicates
9333016 + 0 mapped (90.06% : N/A)
9884708 + 0 paired in sequencing
4942354 + 0 read1
4942354 + 0 read2
7236106 + 0 properly paired (73.21% : N/A)
8651102 + 0 with itself and mate mapped
203858 + 0 singletons (2.06% : N/A)
1345582 + 0 with mate mapped to a different chr
469638 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2215
9585700 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
406498 + 0 supplementary
0 + 0 duplicates
8248050 + 0 mapped (86.05% : N/A)
9179202 + 0 paired in sequencing
4589601 + 0 read1
4589601 + 0 read2
6327916 + 0 properly paired (68.94% : N/A)
7637362 + 0 with itself and mate mapped
204190 + 0 singletons (2.22% : N/A)
1254342 + 0 with mate mapped to a different chr
443565 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2216
13994528 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
651558 + 0 supplementary
0 + 0 duplicates
12967506 + 0 mapped (92.66% : N/A)
13342970 + 0 paired in sequencing
6671485 + 0 read1
6671485 + 0 read2
9817460 + 0 properly paired (73.58% : N/A)
11959986 + 0 with itself and mate mapped
355962 + 0 singletons (2.67% : N/A)
2050466 + 0 with mate mapped to a different chr
733774 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2217
11987805 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
525065 + 0 supplementary
0 + 0 duplicates
11128080 + 0 mapped (92.83% : N/A)
11462740 + 0 paired in sequencing
5731370 + 0 read1
5731370 + 0 read2
8505268 + 0 properly paired (74.20% : N/A)
10272760 + 0 with itself and mate mapped
330255 + 0 singletons (2.88% : N/A)
1686348 + 0 with mate mapped to a different chr
596989 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2219
3228516 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
142044 + 0 supplementary
0 + 0 duplicates
3024658 + 0 mapped (93.69% : N/A)
3086472 + 0 paired in sequencing
1543236 + 0 read1
1543236 + 0 read2
2302726 + 0 properly paired (74.61% : N/A)
2801016 + 0 with itself and mate mapped
81598 + 0 singletons (2.64% : N/A)
479026 + 0 with mate mapped to a different chr
175540 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2222
6575142 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
298526 + 0 supplementary
0 + 0 duplicates
6111236 + 0 mapped (92.94% : N/A)
6276616 + 0 paired in sequencing
3138308 + 0 read1
3138308 + 0 read2
4813144 + 0 properly paired (76.68% : N/A)
5670176 + 0 with itself and mate mapped
142534 + 0 singletons (2.27% : N/A)
824538 + 0 with mate mapped to a different chr
280574 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2223
4858339 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
218641 + 0 supplementary
0 + 0 duplicates
4492798 + 0 mapped (92.48% : N/A)
4639698 + 0 paired in sequencing
2319849 + 0 read1
2319849 + 0 read2
3501848 + 0 properly paired (75.48% : N/A)
4160508 + 0 with itself and mate mapped
113649 + 0 singletons (2.45% : N/A)
635240 + 0 with mate mapped to a different chr
211844 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_DUP_SH_Q2223
9170508 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
415946 + 0 supplementary
0 + 0 duplicates
8514551 + 0 mapped (92.85% : N/A)
8754562 + 0 paired in sequencing
4377281 + 0 read1
4377281 + 0 read2
6486634 + 0 properly paired (74.09% : N/A)
7867178 + 0 with itself and mate mapped
231427 + 0 singletons (2.64% : N/A)
1323966 + 0 with mate mapped to a different chr
470672 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2224
11286570 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
549246 + 0 supplementary
0 + 0 duplicates
10493281 + 0 mapped (92.97% : N/A)
10737324 + 0 paired in sequencing
5368662 + 0 read1
5368662 + 0 read2
7987224 + 0 properly paired (74.39% : N/A)
9674666 + 0 with itself and mate mapped
269369 + 0 singletons (2.51% : N/A)
1612824 + 0 with mate mapped to a different chr
566856 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2225
9382071 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
440491 + 0 supplementary
0 + 0 duplicates
8757902 + 0 mapped (93.35% : N/A)
8941580 + 0 paired in sequencing
4470790 + 0 read1
4470790 + 0 read2
6722786 + 0 properly paired (75.19% : N/A)
8106382 + 0 with itself and mate mapped
211029 + 0 singletons (2.36% : N/A)
1322696 + 0 with mate mapped to a different chr
471094 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2226
11018197 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
530083 + 0 supplementary
0 + 0 duplicates
10278681 + 0 mapped (93.29% : N/A)
10488114 + 0 paired in sequencing
5244057 + 0 read1
5244057 + 0 read2
7940686 + 0 properly paired (75.71% : N/A)
9499368 + 0 with itself and mate mapped
249230 + 0 singletons (2.38% : N/A)
1491432 + 0 with mate mapped to a different chr
524197 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_G_SH_Q2227
12371016 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
552146 + 0 supplementary
0 + 0 duplicates
11512623 + 0 mapped (93.06% : N/A)
11818870 + 0 paired in sequencing
5909435 + 0 read1
5909435 + 0 read2
8898140 + 0 properly paired (75.29% : N/A)
10674446 + 0 with itself and mate mapped
286031 + 0 singletons (2.42% : N/A)
1699300 + 0 with mate mapped to a different chr
599678 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1850
13187862 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
584088 + 0 supplementary
0 + 0 duplicates
11810732 + 0 mapped (89.56% : N/A)
12603774 + 0 paired in sequencing
6301887 + 0 read1
6301887 + 0 read2
9020054 + 0 properly paired (71.57% : N/A)
10920436 + 0 with itself and mate mapped
306208 + 0 singletons (2.43% : N/A)
1818946 + 0 with mate mapped to a different chr
654741 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1854
13345659 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
615003 + 0 supplementary
0 + 0 duplicates
12288135 + 0 mapped (92.08% : N/A)
12730656 + 0 paired in sequencing
6365328 + 0 read1
6365328 + 0 read2
9481844 + 0 properly paired (74.48% : N/A)
11383792 + 0 with itself and mate mapped
289340 + 0 singletons (2.27% : N/A)
1811294 + 0 with mate mapped to a different chr
645805 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1856
10727556 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
481706 + 0 supplementary
0 + 0 duplicates
9837122 + 0 mapped (91.70% : N/A)
10245850 + 0 paired in sequencing
5122925 + 0 read1
5122925 + 0 read2
7460472 + 0 properly paired (72.81% : N/A)
9096110 + 0 with itself and mate mapped
259306 + 0 singletons (2.53% : N/A)
1559630 + 0 with mate mapped to a different chr
557122 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1862
9224888 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
402816 + 0 supplementary
0 + 0 duplicates
8231597 + 0 mapped (89.23% : N/A)
8822072 + 0 paired in sequencing
4411036 + 0 read1
4411036 + 0 read2
6378732 + 0 properly paired (72.30% : N/A)
7621800 + 0 with itself and mate mapped
206981 + 0 singletons (2.35% : N/A)
1191756 + 0 with mate mapped to a different chr
413682 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1865
9610936 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
424642 + 0 supplementary
0 + 0 duplicates
8700655 + 0 mapped (90.53% : N/A)
9186294 + 0 paired in sequencing
4593147 + 0 read1
4593147 + 0 read2
6725144 + 0 properly paired (73.21% : N/A)
8053340 + 0 with itself and mate mapped
222673 + 0 singletons (2.42% : N/A)
1273602 + 0 with mate mapped to a different chr
446017 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1866
10267871 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
480297 + 0 supplementary
0 + 0 duplicates
9455010 + 0 mapped (92.08% : N/A)
9787574 + 0 paired in sequencing
4893787 + 0 read1
4893787 + 0 read2
7361108 + 0 properly paired (75.21% : N/A)
8782886 + 0 with itself and mate mapped
191827 + 0 singletons (1.96% : N/A)
1352642 + 0 with mate mapped to a different chr
475055 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1868
11202557 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
518837 + 0 supplementary
0 + 0 duplicates
10383628 + 0 mapped (92.69% : N/A)
10683720 + 0 paired in sequencing
5341860 + 0 read1
5341860 + 0 read2
8017334 + 0 properly paired (75.04% : N/A)
9618154 + 0 with itself and mate mapped
246637 + 0 singletons (2.31% : N/A)
1528586 + 0 with mate mapped to a different chr
545622 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1869
10828476 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
496746 + 0 supplementary
0 + 0 duplicates
9937607 + 0 mapped (91.77% : N/A)
10331730 + 0 paired in sequencing
5165865 + 0 read1
5165865 + 0 read2
7631672 + 0 properly paired (73.87% : N/A)
9193072 + 0 with itself and mate mapped
247789 + 0 singletons (2.40% : N/A)
1492302 + 0 with mate mapped to a different chr
532025 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1870
13635270 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
656946 + 0 supplementary
0 + 0 duplicates
12457524 + 0 mapped (91.36% : N/A)
12978324 + 0 paired in sequencing
6489162 + 0 read1
6489162 + 0 read2
9628108 + 0 properly paired (74.19% : N/A)
11533640 + 0 with itself and mate mapped
266938 + 0 singletons (2.06% : N/A)
1811456 + 0 with mate mapped to a different chr
639001 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1871
9660068 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
403420 + 0 supplementary
0 + 0 duplicates
8092318 + 0 mapped (83.77% : N/A)
9256648 + 0 paired in sequencing
4628324 + 0 read1
4628324 + 0 read2
6244494 + 0 properly paired (67.46% : N/A)
7492778 + 0 with itself and mate mapped
196120 + 0 singletons (2.12% : N/A)
1194462 + 0 with mate mapped to a different chr
425290 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1872
9875259 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
456603 + 0 supplementary
0 + 0 duplicates
8986855 + 0 mapped (91.00% : N/A)
9418656 + 0 paired in sequencing
4709328 + 0 read1
4709328 + 0 read2
6864260 + 0 properly paired (72.88% : N/A)
8299928 + 0 with itself and mate mapped
230324 + 0 singletons (2.45% : N/A)
1370442 + 0 with mate mapped to a different chr
484991 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1873
10811088 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
502914 + 0 supplementary
0 + 0 duplicates
9800705 + 0 mapped (90.65% : N/A)
10308174 + 0 paired in sequencing
5154087 + 0 read1
5154087 + 0 read2
7499700 + 0 properly paired (72.75% : N/A)
9065562 + 0 with itself and mate mapped
232229 + 0 singletons (2.25% : N/A)
1496896 + 0 with mate mapped to a different chr
530991 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1874
14669908 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
662470 + 0 supplementary
0 + 0 duplicates
13357905 + 0 mapped (91.06% : N/A)
14007438 + 0 paired in sequencing
7003719 + 0 read1
7003719 + 0 read2
10180270 + 0 properly paired (72.68% : N/A)
12361112 + 0 with itself and mate mapped
334323 + 0 singletons (2.39% : N/A)
2081112 + 0 with mate mapped to a different chr
752739 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1875
13549100 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
616800 + 0 supplementary
0 + 0 duplicates
12334126 + 0 mapped (91.03% : N/A)
12932300 + 0 paired in sequencing
6466150 + 0 read1
6466150 + 0 read2
9399230 + 0 properly paired (72.68% : N/A)
11405090 + 0 with itself and mate mapped
312236 + 0 singletons (2.41% : N/A)
1920618 + 0 with mate mapped to a different chr
684872 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1876
11418379 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
526259 + 0 supplementary
0 + 0 duplicates
10426278 + 0 mapped (91.31% : N/A)
10892120 + 0 paired in sequencing
5446060 + 0 read1
5446060 + 0 read2
7938330 + 0 properly paired (72.88% : N/A)
9632278 + 0 with itself and mate mapped
267741 + 0 singletons (2.46% : N/A)
1620024 + 0 with mate mapped to a different chr
584868 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1877
13244006 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
591916 + 0 supplementary
0 + 0 duplicates
11663229 + 0 mapped (88.06% : N/A)
12652090 + 0 paired in sequencing
6326045 + 0 read1
6326045 + 0 read2
8972760 + 0 properly paired (70.92% : N/A)
10800310 + 0 with itself and mate mapped
271003 + 0 singletons (2.14% : N/A)
1753476 + 0 with mate mapped to a different chr
621918 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1878
14736983 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
707145 + 0 supplementary
0 + 0 duplicates
13153166 + 0 mapped (89.25% : N/A)
14029838 + 0 paired in sequencing
7014919 + 0 read1
7014919 + 0 read2
9956488 + 0 properly paired (70.97% : N/A)
12113616 + 0 with itself and mate mapped
332405 + 0 singletons (2.37% : N/A)
2057476 + 0 with mate mapped to a different chr
728856 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1879
12220578 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
532302 + 0 supplementary
0 + 0 duplicates
10980320 + 0 mapped (89.85% : N/A)
11688276 + 0 paired in sequencing
5844138 + 0 read1
5844138 + 0 read2
8473002 + 0 properly paired (72.49% : N/A)
10171676 + 0 with itself and mate mapped
276342 + 0 singletons (2.36% : N/A)
1633428 + 0 with mate mapped to a different chr
581971 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1880
15009582 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
630764 + 0 supplementary
0 + 0 duplicates
12697781 + 0 mapped (84.60% : N/A)
14378818 + 0 paired in sequencing
7189409 + 0 read1
7189409 + 0 read2
9740484 + 0 properly paired (67.74% : N/A)
11763206 + 0 with itself and mate mapped
303811 + 0 singletons (2.11% : N/A)
1942710 + 0 with mate mapped to a different chr
690613 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1881
16258818 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
764930 + 0 supplementary
0 + 0 duplicates
14849459 + 0 mapped (91.33% : N/A)
15493888 + 0 paired in sequencing
7746944 + 0 read1
7746944 + 0 read2
11270178 + 0 properly paired (72.74% : N/A)
13711886 + 0 with itself and mate mapped
372643 + 0 singletons (2.41% : N/A)
2337306 + 0 with mate mapped to a different chr
836475 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1882
10631324 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
478616 + 0 supplementary
0 + 0 duplicates
9732016 + 0 mapped (91.54% : N/A)
10152708 + 0 paired in sequencing
5076354 + 0 read1
5076354 + 0 read2
7393226 + 0 properly paired (72.82% : N/A)
8983358 + 0 with itself and mate mapped
270042 + 0 singletons (2.66% : N/A)
1523924 + 0 with mate mapped to a different chr
530000 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1885
12591988 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
578620 + 0 supplementary
0 + 0 duplicates
11491079 + 0 mapped (91.26% : N/A)
12013368 + 0 paired in sequencing
6006684 + 0 read1
6006684 + 0 read2
8844554 + 0 properly paired (73.62% : N/A)
10612168 + 0 with itself and mate mapped
300291 + 0 singletons (2.50% : N/A)
1693288 + 0 with mate mapped to a different chr
595224 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q1886
11505961 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
530827 + 0 supplementary
0 + 0 duplicates
10528828 + 0 mapped (91.51% : N/A)
10975134 + 0 paired in sequencing
5487567 + 0 read1
5487567 + 0 read2
7980814 + 0 properly paired (72.72% : N/A)
9719746 + 0 with itself and mate mapped
278255 + 0 singletons (2.54% : N/A)
1663484 + 0 with mate mapped to a different chr
596353 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2001
8607478 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
388694 + 0 supplementary
0 + 0 duplicates
7735199 + 0 mapped (89.87% : N/A)
8218784 + 0 paired in sequencing
4109392 + 0 read1
4109392 + 0 read2
5953524 + 0 properly paired (72.44% : N/A)
7163676 + 0 with itself and mate mapped
182829 + 0 singletons (2.22% : N/A)
1158186 + 0 with mate mapped to a different chr
415977 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2002
10696149 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
485063 + 0 supplementary
0 + 0 duplicates
9828663 + 0 mapped (91.89% : N/A)
10211086 + 0 paired in sequencing
5105543 + 0 read1
5105543 + 0 read2
7555822 + 0 properly paired (74.00% : N/A)
9099644 + 0 with itself and mate mapped
243956 + 0 singletons (2.39% : N/A)
1475934 + 0 with mate mapped to a different chr
511680 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2003
11753106 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
541106 + 0 supplementary
0 + 0 duplicates
10548064 + 0 mapped (89.75% : N/A)
11212000 + 0 paired in sequencing
5606000 + 0 read1
5606000 + 0 read2
8109810 + 0 properly paired (72.33% : N/A)
9764150 + 0 with itself and mate mapped
242808 + 0 singletons (2.17% : N/A)
1578454 + 0 with mate mapped to a different chr
561875 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2006
13668373 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
642661 + 0 supplementary
0 + 0 duplicates
12504148 + 0 mapped (91.48% : N/A)
13025712 + 0 paired in sequencing
6512856 + 0 read1
6512856 + 0 read2
9551892 + 0 properly paired (73.33% : N/A)
11568594 + 0 with itself and mate mapped
292893 + 0 singletons (2.25% : N/A)
1924074 + 0 with mate mapped to a different chr
686279 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2007
10977979 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
515963 + 0 supplementary
0 + 0 duplicates
10095210 + 0 mapped (91.96% : N/A)
10462016 + 0 paired in sequencing
5231008 + 0 read1
5231008 + 0 read2
7773790 + 0 properly paired (74.30% : N/A)
9338276 + 0 with itself and mate mapped
240971 + 0 singletons (2.30% : N/A)
1490974 + 0 with mate mapped to a different chr
534420 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2008
11936116 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
539562 + 0 supplementary
0 + 0 duplicates
10958346 + 0 mapped (91.81% : N/A)
11396554 + 0 paired in sequencing
5698277 + 0 read1
5698277 + 0 read2
8520136 + 0 properly paired (74.76% : N/A)
10154326 + 0 with itself and mate mapped
264458 + 0 singletons (2.32% : N/A)
1563506 + 0 with mate mapped to a different chr
546630 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2050
15597943 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
749573 + 0 supplementary
0 + 0 duplicates
14304142 + 0 mapped (91.71% : N/A)
14848370 + 0 paired in sequencing
7424185 + 0 read1
7424185 + 0 read2
10985522 + 0 properly paired (73.98% : N/A)
13211706 + 0 with itself and mate mapped
342863 + 0 singletons (2.31% : N/A)
2126178 + 0 with mate mapped to a different chr
753431 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2051
14241841 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
652153 + 0 supplementary
0 + 0 duplicates
12930245 + 0 mapped (90.79% : N/A)
13589688 + 0 paired in sequencing
6794844 + 0 read1
6794844 + 0 read2
9766666 + 0 properly paired (71.87% : N/A)
11933604 + 0 with itself and mate mapped
344488 + 0 singletons (2.53% : N/A)
2070554 + 0 with mate mapped to a different chr
749454 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2055
9411156 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
420436 + 0 supplementary
0 + 0 duplicates
8617272 + 0 mapped (91.56% : N/A)
8990720 + 0 paired in sequencing
4495360 + 0 read1
4495360 + 0 read2
6638612 + 0 properly paired (73.84% : N/A)
7997458 + 0 with itself and mate mapped
199378 + 0 singletons (2.22% : N/A)
1301948 + 0 with mate mapped to a different chr
461679 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2056
10364528 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
497210 + 0 supplementary
0 + 0 duplicates
9495524 + 0 mapped (91.62% : N/A)
9867318 + 0 paired in sequencing
4933659 + 0 read1
4933659 + 0 read2
7267038 + 0 properly paired (73.65% : N/A)
8787242 + 0 with itself and mate mapped
211072 + 0 singletons (2.14% : N/A)
1451074 + 0 with mate mapped to a different chr
516398 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2057
9388323 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
425075 + 0 supplementary
0 + 0 duplicates
8415844 + 0 mapped (89.64% : N/A)
8963248 + 0 paired in sequencing
4481624 + 0 read1
4481624 + 0 read2
6471158 + 0 properly paired (72.20% : N/A)
7788762 + 0 with itself and mate mapped
202007 + 0 singletons (2.25% : N/A)
1255810 + 0 with mate mapped to a different chr
447136 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2058
11679997 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
536859 + 0 supplementary
0 + 0 duplicates
10583327 + 0 mapped (90.61% : N/A)
11143138 + 0 paired in sequencing
5571569 + 0 read1
5571569 + 0 read2
8088884 + 0 properly paired (72.59% : N/A)
9784098 + 0 with itself and mate mapped
262370 + 0 singletons (2.35% : N/A)
1626440 + 0 with mate mapped to a different chr
579779 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2059
9697433 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
449973 + 0 supplementary
0 + 0 duplicates
8908297 + 0 mapped (91.86% : N/A)
9247460 + 0 paired in sequencing
4623730 + 0 read1
4623730 + 0 read2
6899762 + 0 properly paired (74.61% : N/A)
8243386 + 0 with itself and mate mapped
214938 + 0 singletons (2.32% : N/A)
1286616 + 0 with mate mapped to a different chr
450914 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2060
10685038 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
492850 + 0 supplementary
0 + 0 duplicates
9842454 + 0 mapped (92.11% : N/A)
10192188 + 0 paired in sequencing
5096094 + 0 read1
5096094 + 0 read2
7673890 + 0 properly paired (75.29% : N/A)
9130518 + 0 with itself and mate mapped
219086 + 0 singletons (2.15% : N/A)
1387376 + 0 with mate mapped to a different chr
497742 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2061
10578507 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
465639 + 0 supplementary
0 + 0 duplicates
9751482 + 0 mapped (92.18% : N/A)
10112868 + 0 paired in sequencing
5056434 + 0 read1
5056434 + 0 read2
7509752 + 0 properly paired (74.26% : N/A)
9042994 + 0 with itself and mate mapped
242849 + 0 singletons (2.40% : N/A)
1470342 + 0 with mate mapped to a different chr
521578 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2062
10487467 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
475963 + 0 supplementary
0 + 0 duplicates
9546127 + 0 mapped (91.02% : N/A)
10011504 + 0 paired in sequencing
5005752 + 0 read1
5005752 + 0 read2
7359798 + 0 properly paired (73.51% : N/A)
8839966 + 0 with itself and mate mapped
230198 + 0 singletons (2.30% : N/A)
1412116 + 0 with mate mapped to a different chr
495824 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2063
10170952 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
474572 + 0 supplementary
0 + 0 duplicates
9348179 + 0 mapped (91.91% : N/A)
9696380 + 0 paired in sequencing
4848190 + 0 read1
4848190 + 0 read2
7095486 + 0 properly paired (73.18% : N/A)
8643908 + 0 with itself and mate mapped
229699 + 0 singletons (2.37% : N/A)
1480852 + 0 with mate mapped to a different chr
533965 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2064
12036804 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
553290 + 0 supplementary
0 + 0 duplicates
11082229 + 0 mapped (92.07% : N/A)
11483514 + 0 paired in sequencing
5741757 + 0 read1
5741757 + 0 read2
8472174 + 0 properly paired (73.78% : N/A)
10258890 + 0 with itself and mate mapped
270049 + 0 singletons (2.35% : N/A)
1704516 + 0 with mate mapped to a different chr
608338 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2066
12823978 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
589652 + 0 supplementary
0 + 0 duplicates
11827357 + 0 mapped (92.23% : N/A)
12234326 + 0 paired in sequencing
6117163 + 0 read1
6117163 + 0 read2
9041996 + 0 properly paired (73.91% : N/A)
10929480 + 0 with itself and mate mapped
308225 + 0 singletons (2.52% : N/A)
1811422 + 0 with mate mapped to a different chr
636004 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2068
13429294 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
627570 + 0 supplementary
0 + 0 duplicates
12289062 + 0 mapped (91.51% : N/A)
12801724 + 0 paired in sequencing
6400862 + 0 read1
6400862 + 0 read2
9237216 + 0 properly paired (72.16% : N/A)
11321146 + 0 with itself and mate mapped
340346 + 0 singletons (2.66% : N/A)
1989640 + 0 with mate mapped to a different chr
713205 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2070
12173164 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
533392 + 0 supplementary
0 + 0 duplicates
11245799 + 0 mapped (92.38% : N/A)
11639772 + 0 paired in sequencing
5819886 + 0 read1
5819886 + 0 read2
8698744 + 0 properly paired (74.73% : N/A)
10446626 + 0 with itself and mate mapped
265781 + 0 singletons (2.28% : N/A)
1671300 + 0 with mate mapped to a different chr
585420 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2071
8541189 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
383067 + 0 supplementary
0 + 0 duplicates
7665857 + 0 mapped (89.75% : N/A)
8158122 + 0 paired in sequencing
4079061 + 0 read1
4079061 + 0 read2
5692838 + 0 properly paired (69.78% : N/A)
7068842 + 0 with itself and mate mapped
213948 + 0 singletons (2.62% : N/A)
1319550 + 0 with mate mapped to a different chr
484757 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2073
6027989 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
261737 + 0 supplementary
0 + 0 duplicates
5365160 + 0 mapped (89.00% : N/A)
5766252 + 0 paired in sequencing
2883126 + 0 read1
2883126 + 0 read2
3962342 + 0 properly paired (68.72% : N/A)
4904332 + 0 with itself and mate mapped
199091 + 0 singletons (3.45% : N/A)
898786 + 0 with mate mapped to a different chr
326915 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2074
13302847 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
599027 + 0 supplementary
0 + 0 duplicates
12269315 + 0 mapped (92.23% : N/A)
12703820 + 0 paired in sequencing
6351910 + 0 read1
6351910 + 0 read2
9421496 + 0 properly paired (74.16% : N/A)
11369084 + 0 with itself and mate mapped
301204 + 0 singletons (2.37% : N/A)
1863580 + 0 with mate mapped to a different chr
672834 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2076
12432571 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
566891 + 0 supplementary
0 + 0 duplicates
11339734 + 0 mapped (91.21% : N/A)
11865680 + 0 paired in sequencing
5932840 + 0 read1
5932840 + 0 read2
8698844 + 0 properly paired (73.31% : N/A)
10497188 + 0 with itself and mate mapped
275655 + 0 singletons (2.32% : N/A)
1718902 + 0 with mate mapped to a different chr
613464 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2078
11483059 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
516185 + 0 supplementary
0 + 0 duplicates
10448296 + 0 mapped (90.99% : N/A)
10966874 + 0 paired in sequencing
5483437 + 0 read1
5483437 + 0 read2
7844602 + 0 properly paired (71.53% : N/A)
9627760 + 0 with itself and mate mapped
304351 + 0 singletons (2.78% : N/A)
1695550 + 0 with mate mapped to a different chr
598827 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2080
10093721 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
443203 + 0 supplementary
0 + 0 duplicates
9208798 + 0 mapped (91.23% : N/A)
9650518 + 0 paired in sequencing
4825259 + 0 read1
4825259 + 0 read2
7016590 + 0 properly paired (72.71% : N/A)
8514786 + 0 with itself and mate mapped
250809 + 0 singletons (2.60% : N/A)
1437908 + 0 with mate mapped to a different chr
510714 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2082
10687673 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
449771 + 0 supplementary
0 + 0 duplicates
9531075 + 0 mapped (89.18% : N/A)
10237902 + 0 paired in sequencing
5118951 + 0 read1
5118951 + 0 read2
7287326 + 0 properly paired (71.18% : N/A)
8820218 + 0 with itself and mate mapped
261086 + 0 singletons (2.55% : N/A)
1472406 + 0 with mate mapped to a different chr
521831 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2084
11054541 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
488975 + 0 supplementary
0 + 0 duplicates
10045709 + 0 mapped (90.87% : N/A)
10565566 + 0 paired in sequencing
5282783 + 0 read1
5282783 + 0 read2
7713602 + 0 properly paired (73.01% : N/A)
9297164 + 0 with itself and mate mapped
259570 + 0 singletons (2.46% : N/A)
1513192 + 0 with mate mapped to a different chr
536741 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2086
10119903 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
465939 + 0 supplementary
0 + 0 duplicates
9318031 + 0 mapped (92.08% : N/A)
9653964 + 0 paired in sequencing
4826982 + 0 read1
4826982 + 0 read2
7117938 + 0 properly paired (73.73% : N/A)
8611816 + 0 with itself and mate mapped
240276 + 0 singletons (2.49% : N/A)
1431742 + 0 with mate mapped to a different chr
515455 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2088
9047944 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
407284 + 0 supplementary
0 + 0 duplicates
8283813 + 0 mapped (91.55% : N/A)
8640660 + 0 paired in sequencing
4320330 + 0 read1
4320330 + 0 read2
6443246 + 0 properly paired (74.57% : N/A)
7685496 + 0 with itself and mate mapped
191033 + 0 singletons (2.21% : N/A)
1187658 + 0 with mate mapped to a different chr
416777 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2090
10606962 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
473266 + 0 supplementary
0 + 0 duplicates
9625682 + 0 mapped (90.75% : N/A)
10133696 + 0 paired in sequencing
5066848 + 0 read1
5066848 + 0 read2
7416486 + 0 properly paired (73.19% : N/A)
8920668 + 0 with itself and mate mapped
231748 + 0 singletons (2.29% : N/A)
1437856 + 0 with mate mapped to a different chr
509967 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2091
12052783 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
553017 + 0 supplementary
0 + 0 duplicates
10924679 + 0 mapped (90.64% : N/A)
11499766 + 0 paired in sequencing
5749883 + 0 read1
5749883 + 0 read2
8348262 + 0 properly paired (72.60% : N/A)
10102330 + 0 with itself and mate mapped
269332 + 0 singletons (2.34% : N/A)
1675496 + 0 with mate mapped to a different chr
593661 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2092
13209636 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
585978 + 0 supplementary
0 + 0 duplicates
12085215 + 0 mapped (91.49% : N/A)
12623658 + 0 paired in sequencing
6311829 + 0 read1
6311829 + 0 read2
9338072 + 0 properly paired (73.97% : N/A)
11203196 + 0 with itself and mate mapped
296041 + 0 singletons (2.35% : N/A)
1781098 + 0 with mate mapped to a different chr
625048 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2093
14498811 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
668745 + 0 supplementary
0 + 0 duplicates
12947072 + 0 mapped (89.30% : N/A)
13830066 + 0 paired in sequencing
6915033 + 0 read1
6915033 + 0 read2
9749172 + 0 properly paired (70.49% : N/A)
11940906 + 0 with itself and mate mapped
337421 + 0 singletons (2.44% : N/A)
2100342 + 0 with mate mapped to a different chr
747239 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2094
13481801 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
616279 + 0 supplementary
0 + 0 duplicates
12382610 + 0 mapped (91.85% : N/A)
12865522 + 0 paired in sequencing
6432761 + 0 read1
6432761 + 0 read2
9505670 + 0 properly paired (73.88% : N/A)
11460202 + 0 with itself and mate mapped
306129 + 0 singletons (2.38% : N/A)
1873232 + 0 with mate mapped to a different chr
649780 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2096
14135294 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
667078 + 0 supplementary
0 + 0 duplicates
12863084 + 0 mapped (91.00% : N/A)
13468216 + 0 paired in sequencing
6734108 + 0 read1
6734108 + 0 read2
9784286 + 0 properly paired (72.65% : N/A)
11858238 + 0 with itself and mate mapped
337768 + 0 singletons (2.51% : N/A)
1987198 + 0 with mate mapped to a different chr
706042 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2100
15893914 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
727578 + 0 supplementary
0 + 0 duplicates
14350791 + 0 mapped (90.29% : N/A)
15166336 + 0 paired in sequencing
7583168 + 0 read1
7583168 + 0 read2
11080826 + 0 properly paired (73.06% : N/A)
13281098 + 0 with itself and mate mapped
342115 + 0 singletons (2.26% : N/A)
2095344 + 0 with mate mapped to a different chr
737118 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2101
18064758 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
825844 + 0 supplementary
0 + 0 duplicates
16654545 + 0 mapped (92.19% : N/A)
17238914 + 0 paired in sequencing
8619457 + 0 read1
8619457 + 0 read2
12819348 + 0 properly paired (74.36% : N/A)
15418748 + 0 with itself and mate mapped
409953 + 0 singletons (2.38% : N/A)
2486358 + 0 with mate mapped to a different chr
882209 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2105
9801502 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
456588 + 0 supplementary
0 + 0 duplicates
8966511 + 0 mapped (91.48% : N/A)
9344914 + 0 paired in sequencing
4672457 + 0 read1
4672457 + 0 read2
6892156 + 0 properly paired (73.75% : N/A)
8287008 + 0 with itself and mate mapped
222915 + 0 singletons (2.39% : N/A)
1333746 + 0 with mate mapped to a different chr
470154 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2108
12274708 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
563816 + 0 supplementary
0 + 0 duplicates
11090715 + 0 mapped (90.35% : N/A)
11710892 + 0 paired in sequencing
5855446 + 0 read1
5855446 + 0 read2
8495452 + 0 properly paired (72.54% : N/A)
10257018 + 0 with itself and mate mapped
269881 + 0 singletons (2.30% : N/A)
1681146 + 0 with mate mapped to a different chr
596187 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2111
13758732 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
667778 + 0 supplementary
0 + 0 duplicates
12745215 + 0 mapped (92.63% : N/A)
13090954 + 0 paired in sequencing
6545477 + 0 read1
6545477 + 0 read2
9779094 + 0 properly paired (74.70% : N/A)
11791798 + 0 with itself and mate mapped
285639 + 0 singletons (2.18% : N/A)
1919638 + 0 with mate mapped to a different chr
685700 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2113
13530401 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
595973 + 0 supplementary
0 + 0 duplicates
12557350 + 0 mapped (92.81% : N/A)
12934428 + 0 paired in sequencing
6467214 + 0 read1
6467214 + 0 read2
9672810 + 0 properly paired (74.78% : N/A)
11637712 + 0 with itself and mate mapped
323665 + 0 singletons (2.50% : N/A)
1871350 + 0 with mate mapped to a different chr
683087 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2114
11575545 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
549501 + 0 supplementary
0 + 0 duplicates
10703923 + 0 mapped (92.47% : N/A)
11026044 + 0 paired in sequencing
5513022 + 0 read1
5513022 + 0 read2
8084310 + 0 properly paired (73.32% : N/A)
9869382 + 0 with itself and mate mapped
285040 + 0 singletons (2.59% : N/A)
1705166 + 0 with mate mapped to a different chr
625987 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2115
15073565 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
715335 + 0 supplementary
0 + 0 duplicates
14051613 + 0 mapped (93.22% : N/A)
14358230 + 0 paired in sequencing
7179115 + 0 read1
7179115 + 0 read2
10700066 + 0 properly paired (74.52% : N/A)
12982052 + 0 with itself and mate mapped
354226 + 0 singletons (2.47% : N/A)
2174052 + 0 with mate mapped to a different chr
792137 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2117
11546543 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
529787 + 0 supplementary
0 + 0 duplicates
10712772 + 0 mapped (92.78% : N/A)
11016756 + 0 paired in sequencing
5508378 + 0 read1
5508378 + 0 read2
8261036 + 0 properly paired (74.99% : N/A)
9918314 + 0 with itself and mate mapped
264671 + 0 singletons (2.40% : N/A)
1585624 + 0 with mate mapped to a different chr
561851 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2118
17295059 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
845527 + 0 supplementary
0 + 0 duplicates
16122185 + 0 mapped (93.22% : N/A)
16449532 + 0 paired in sequencing
8224766 + 0 read1
8224766 + 0 read2
12248460 + 0 properly paired (74.46% : N/A)
14884386 + 0 with itself and mate mapped
392272 + 0 singletons (2.38% : N/A)
2524274 + 0 with mate mapped to a different chr
897743 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2119
9886665 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
465037 + 0 supplementary
0 + 0 duplicates
9139175 + 0 mapped (92.44% : N/A)
9421628 + 0 paired in sequencing
4710814 + 0 read1
4710814 + 0 read2
6897958 + 0 properly paired (73.21% : N/A)
8417368 + 0 with itself and mate mapped
256770 + 0 singletons (2.73% : N/A)
1456860 + 0 with mate mapped to a different chr
528440 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2120
11920584 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
542564 + 0 supplementary
0 + 0 duplicates
11016362 + 0 mapped (92.41% : N/A)
11378020 + 0 paired in sequencing
5689010 + 0 read1
5689010 + 0 read2
8387428 + 0 properly paired (73.72% : N/A)
10175356 + 0 with itself and mate mapped
298442 + 0 singletons (2.62% : N/A)
1711006 + 0 with mate mapped to a different chr
606021 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2121
9832655 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
471289 + 0 supplementary
0 + 0 duplicates
9116123 + 0 mapped (92.71% : N/A)
9361366 + 0 paired in sequencing
4680683 + 0 read1
4680683 + 0 read2
6908498 + 0 properly paired (73.80% : N/A)
8401978 + 0 with itself and mate mapped
242856 + 0 singletons (2.59% : N/A)
1433090 + 0 with mate mapped to a different chr
520092 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_DUP_SH_Q2121
13027957 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
634949 + 0 supplementary
0 + 0 duplicates
12132511 + 0 mapped (93.13% : N/A)
12393008 + 0 paired in sequencing
6196504 + 0 read1
6196504 + 0 read2
9165298 + 0 properly paired (73.96% : N/A)
11189502 + 0 with itself and mate mapped
308060 + 0 singletons (2.49% : N/A)
1938196 + 0 with mate mapped to a different chr
705526 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2122
11972163 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
566367 + 0 supplementary
0 + 0 duplicates
11018911 + 0 mapped (92.04% : N/A)
11405796 + 0 paired in sequencing
5702898 + 0 read1
5702898 + 0 read2
8253868 + 0 properly paired (72.37% : N/A)
10146022 + 0 with itself and mate mapped
306522 + 0 singletons (2.69% : N/A)
1808068 + 0 with mate mapped to a different chr
637662 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2123
10807042 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
502868 + 0 supplementary
0 + 0 duplicates
10001844 + 0 mapped (92.55% : N/A)
10304174 + 0 paired in sequencing
5152087 + 0 read1
5152087 + 0 read2
7643736 + 0 properly paired (74.18% : N/A)
9234966 + 0 with itself and mate mapped
264010 + 0 singletons (2.56% : N/A)
1528358 + 0 with mate mapped to a different chr
540821 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2124
12645184 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
587804 + 0 supplementary
0 + 0 duplicates
11742560 + 0 mapped (92.86% : N/A)
12057380 + 0 paired in sequencing
6028690 + 0 read1
6028690 + 0 read2
9009880 + 0 properly paired (74.73% : N/A)
10868224 + 0 with itself and mate mapped
286532 + 0 singletons (2.38% : N/A)
1777904 + 0 with mate mapped to a different chr
628159 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2125
13911350 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
657174 + 0 supplementary
0 + 0 duplicates
12881735 + 0 mapped (92.60% : N/A)
13254176 + 0 paired in sequencing
6627088 + 0 read1
6627088 + 0 read2
9830490 + 0 properly paired (74.17% : N/A)
11890226 + 0 with itself and mate mapped
334335 + 0 singletons (2.52% : N/A)
1970552 + 0 with mate mapped to a different chr
700600 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2126
15090410 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
706872 + 0 supplementary
0 + 0 duplicates
13930360 + 0 mapped (92.31% : N/A)
14383538 + 0 paired in sequencing
7191769 + 0 read1
7191769 + 0 read2
10521022 + 0 properly paired (73.15% : N/A)
12871500 + 0 with itself and mate mapped
351988 + 0 singletons (2.45% : N/A)
2249588 + 0 with mate mapped to a different chr
812600 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2127
12059144 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
560946 + 0 supplementary
0 + 0 duplicates
11223953 + 0 mapped (93.07% : N/A)
11498198 + 0 paired in sequencing
5749099 + 0 read1
5749099 + 0 read2
8764012 + 0 properly paired (76.22% : N/A)
10421068 + 0 with itself and mate mapped
241939 + 0 singletons (2.10% : N/A)
1586132 + 0 with mate mapped to a different chr
553167 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2135
13605002 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
608334 + 0 supplementary
0 + 0 duplicates
12661273 + 0 mapped (93.06% : N/A)
12996668 + 0 paired in sequencing
6498334 + 0 read1
6498334 + 0 read2
9887176 + 0 properly paired (76.07% : N/A)
11750306 + 0 with itself and mate mapped
302633 + 0 singletons (2.33% : N/A)
1781650 + 0 with mate mapped to a different chr
625531 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2136
9129631 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
419973 + 0 supplementary
0 + 0 duplicates
8467851 + 0 mapped (92.75% : N/A)
8709658 + 0 paired in sequencing
4354829 + 0 read1
4354829 + 0 read2
6397492 + 0 properly paired (73.45% : N/A)
7820656 + 0 with itself and mate mapped
227222 + 0 singletons (2.61% : N/A)
1364242 + 0 with mate mapped to a different chr
492660 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2142
10490661 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
475787 + 0 supplementary
0 + 0 duplicates
9674278 + 0 mapped (92.22% : N/A)
10014874 + 0 paired in sequencing
5007437 + 0 read1
5007437 + 0 read2
7345596 + 0 properly paired (73.35% : N/A)
8941746 + 0 with itself and mate mapped
256745 + 0 singletons (2.56% : N/A)
1530470 + 0 with mate mapped to a different chr
551978 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2147
9564220 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
445728 + 0 supplementary
0 + 0 duplicates
8829665 + 0 mapped (92.32% : N/A)
9118492 + 0 paired in sequencing
4559246 + 0 read1
4559246 + 0 read2
6698394 + 0 properly paired (73.46% : N/A)
8152132 + 0 with itself and mate mapped
231805 + 0 singletons (2.54% : N/A)
1392678 + 0 with mate mapped to a different chr
502253 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2151
10568213 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
477273 + 0 supplementary
0 + 0 duplicates
9776744 + 0 mapped (92.51% : N/A)
10090940 + 0 paired in sequencing
5045470 + 0 read1
5045470 + 0 read2
7496276 + 0 properly paired (74.29% : N/A)
9027806 + 0 with itself and mate mapped
271665 + 0 singletons (2.69% : N/A)
1468942 + 0 with mate mapped to a different chr
519445 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2152
17745264 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
842514 + 0 supplementary
0 + 0 duplicates
16449009 + 0 mapped (92.70% : N/A)
16902750 + 0 paired in sequencing
8451375 + 0 read1
8451375 + 0 read2
12692254 + 0 properly paired (75.09% : N/A)
15226050 + 0 with itself and mate mapped
380445 + 0 singletons (2.25% : N/A)
2407916 + 0 with mate mapped to a different chr
856607 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2153
10664968 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
468560 + 0 supplementary
0 + 0 duplicates
9855665 + 0 mapped (92.41% : N/A)
10196408 + 0 paired in sequencing
5098204 + 0 read1
5098204 + 0 read2
7593068 + 0 properly paired (74.47% : N/A)
9123534 + 0 with itself and mate mapped
263571 + 0 singletons (2.58% : N/A)
1466650 + 0 with mate mapped to a different chr
524522 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2155
17702792 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
812686 + 0 supplementary
0 + 0 duplicates
16328863 + 0 mapped (92.24% : N/A)
16890106 + 0 paired in sequencing
8445053 + 0 read1
8445053 + 0 read2
12305672 + 0 properly paired (72.86% : N/A)
15035048 + 0 with itself and mate mapped
481129 + 0 singletons (2.85% : N/A)
2606392 + 0 with mate mapped to a different chr
943921 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2157
16733800 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
793746 + 0 supplementary
0 + 0 duplicates
15457498 + 0 mapped (92.37% : N/A)
15940054 + 0 paired in sequencing
7970027 + 0 read1
7970027 + 0 read2
11685334 + 0 properly paired (73.31% : N/A)
14249262 + 0 with itself and mate mapped
414490 + 0 singletons (2.60% : N/A)
2451266 + 0 with mate mapped to a different chr
894139 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2158
10454635 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
475363 + 0 supplementary
0 + 0 duplicates
9594561 + 0 mapped (91.77% : N/A)
9979272 + 0 paired in sequencing
4989636 + 0 read1
4989636 + 0 read2
7337668 + 0 properly paired (73.53% : N/A)
8870018 + 0 with itself and mate mapped
249180 + 0 singletons (2.50% : N/A)
1469938 + 0 with mate mapped to a different chr
521510 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2161
14535381 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
687119 + 0 supplementary
0 + 0 duplicates
13512793 + 0 mapped (92.96% : N/A)
13848262 + 0 paired in sequencing
6924131 + 0 read1
6924131 + 0 read2
10277410 + 0 properly paired (74.21% : N/A)
12497302 + 0 with itself and mate mapped
328372 + 0 singletons (2.37% : N/A)
2125692 + 0 with mate mapped to a different chr
766259 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2163
14241999 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
659303 + 0 supplementary
0 + 0 duplicates
13230994 + 0 mapped (92.90% : N/A)
13582696 + 0 paired in sequencing
6791348 + 0 read1
6791348 + 0 read2
10087458 + 0 properly paired (74.27% : N/A)
12239108 + 0 with itself and mate mapped
332583 + 0 singletons (2.45% : N/A)
2066202 + 0 with mate mapped to a different chr
740491 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2168
12239954 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
586890 + 0 supplementary
0 + 0 duplicates
10891600 + 0 mapped (88.98% : N/A)
11653064 + 0 paired in sequencing
5826532 + 0 read1
5826532 + 0 read2
8303876 + 0 properly paired (71.26% : N/A)
10056244 + 0 with itself and mate mapped
248466 + 0 singletons (2.13% : N/A)
1685086 + 0 with mate mapped to a different chr
585734 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2170
8060210 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
344696 + 0 supplementary
0 + 0 duplicates
6379864 + 0 mapped (79.15% : N/A)
7715514 + 0 paired in sequencing
3857757 + 0 read1
3857757 + 0 read2
4892590 + 0 properly paired (63.41% : N/A)
5884704 + 0 with itself and mate mapped
150464 + 0 singletons (1.95% : N/A)
953700 + 0 with mate mapped to a different chr
321338 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2171
13258433 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
608989 + 0 supplementary
0 + 0 duplicates
11143531 + 0 mapped (84.05% : N/A)
12649444 + 0 paired in sequencing
6324722 + 0 read1
6324722 + 0 read2
8281164 + 0 properly paired (65.47% : N/A)
10225528 + 0 with itself and mate mapped
309014 + 0 singletons (2.44% : N/A)
1870418 + 0 with mate mapped to a different chr
675006 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2172
12966871 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
638663 + 0 supplementary
0 + 0 duplicates
11946182 + 0 mapped (92.13% : N/A)
12328208 + 0 paired in sequencing
6164104 + 0 read1
6164104 + 0 read2
9083950 + 0 properly paired (73.68% : N/A)
11025042 + 0 with itself and mate mapped
282477 + 0 singletons (2.29% : N/A)
1861676 + 0 with mate mapped to a different chr
652194 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2173
10491214 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
530092 + 0 supplementary
0 + 0 duplicates
9303423 + 0 mapped (88.68% : N/A)
9961122 + 0 paired in sequencing
4980561 + 0 read1
4980561 + 0 read2
7073744 + 0 properly paired (71.01% : N/A)
8569510 + 0 with itself and mate mapped
203821 + 0 singletons (2.05% : N/A)
1438480 + 0 with mate mapped to a different chr
506089 + 0 with mate mapped to a different chr (mapQ>=5)
QUAC_W_SH_Q2174
14182422 + 0 in total (QC-passed reads + QC-failed reads)
0 + 0 secondary
650364 + 0 supplementary
0 + 0 duplicates
12862530 + 0 mapped (90.69% : N/A)
13532058 + 0 paired in sequencing
6766029 + 0 read1
6766029 + 0 read2
9862240 + 0 properly paired (72.88% : N/A)
11892290 + 0 with itself and mate mapped
319876 + 0 singletons (2.36% : N/A)
1947020 + 0 with mate mapped to a different chr
690392 + 0 with mate mapped to a different chr (mapQ>=5)
