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Sticky: New Resources for 1000 Genomes ( 1 2) laura	Yesterday 02:37 AM by laura	35	11,648
Sticky: SEQwiki dan	08-09-2010 11:56 PM by scofield_gao	3	13,853
Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 06:45 PM by ECO	236	297,575

Bowtie2.1.0 gave mismatch with -N=0 option tongsandiego	Today 09:20 AM by tongsandiego	15	941
Has anyone tried comparing accuracy using different library preps? oiiio	Today 09:04 AM by oiiio	0	69
DESeq2 glm caveats lukas1848	Today 08:41 AM by lukas1848	2	511
coverage precentage of the hg19 using bowtie2 papori	Today 08:09 AM by jgibbons1	3	191
CLC Genomics Workbench - Windows vs. Linux ( 1 2) figure002	Today 07:10 AM by GenoMax	24	4,017
gene sets for metabolism could not be used by gage/pathview! wmseq	Today 07:02 AM by wmseq	3	540
consensus sequence mmmm	Today 04:12 AM by mmmm	6	377
tophat2 mapping PE and SE reads simultaneously evanharrell	Today 03:14 AM by evanharrell	0	107
trimming in tophat frymor	Today 02:03 AM by dpryan	8	2,137
TopHat - Bowtie read trimming adrian	Today 01:48 AM by anamika	2	1,400
SeqMonk: Visualisation and analysis for large mapped data sets ( 1 2 3 ... Last Page) simonandrews	Today 01:32 AM by simonandrews	236	26,053
question about samtools and snp calling guang918	Today 12:54 AM by gringer	4	469
Too many Variants called by HaplotypeCaller GATK drmaly	Yesterday 09:56 PM by jp.	2	508
Problems with CSHL long RNAseq ENCODE data rxzlmn	Yesterday 08:31 PM by alexdobin	2	452
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data ( 1 2 3 ... Last Page) fkrueger	Yesterday 02:27 PM by fkrueger	316	38,976
Bison: BISlfite alignment On Nodes of a cluster dpryan	Yesterday 01:47 PM by brentp	6	576
bowtie vs bowtie2 for RSEM analysis trinity assembled transcripts horvathdp	Yesterday 12:47 PM by westerman	1	215
Can you do quality trimming in NovoAlign? prs321	Yesterday 12:21 PM by jwfoley	1	199
Ensembl/NCBI/UCSC mouse gene annotations for cufflinks sp144	Yesterday 10:03 AM by sp144	10	1,342
Blastn to return only top hit nr23	Yesterday 09:39 AM by rhinoceros	13	1,580
dbSNP frequencies JohnK	Yesterday 09:36 AM by m_two	2	999
gsnap: How to output only alignments with minimal number of mismatches? DerIch	Yesterday 07:28 AM by DerIch	0	182
volcano plots cummeRbund godzilla07	Yesterday 07:23 AM by AJenkins	5	1,123
A new release of the Snakemake workflow system johanneskoester	Yesterday 07:18 AM by johanneskoester	2	298
DESeq2 ( 1 2 3 ... Last Page) Simon Anders	Yesterday 06:40 AM by mbahin	65	6,953
tools to identify chromatin domain tujchl	Yesterday 06:17 AM by tujchl	0	167
Getting raw counts needed for Deseq/EdgeR from TCGA RSEM files dnet	Yesterday 05:28 AM by mmuurr	3	1,022
FLASH use question yaximik	Yesterday 05:22 AM by kmcarr	3	473
Difficulty aligning to reference with AVA cog	Yesterday 04:39 AM by kammoji	7	1,723
Reformatting BLAST+ pairwise alignment? Genomics101	Yesterday 03:53 AM by lindenb	2	439

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