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Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge khoulahan	02-24-2014 05:28 PM by Brian Bushnell	6	3,681
Sticky: New Resources for 1000 Genomes ( 1 2) laura	12-05-2013 01:37 AM by laura	35	14,522
Sticky: SEQwiki dan	08-09-2010 10:56 PM by scofield_gao	3	16,686
Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 05:45 PM by ECO	236	329,852

Tophat/Cufflinks is sensitive to the read name in the gene expression estimation? wisense	Today 04:33 PM by wisense	0	1
Introducing BBDuk: Adapter/Quality Trimming and Filtering Brian Bushnell	Today 03:01 PM by Brian Bushnell	1	52
BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2) Brian Bushnell	Today 02:58 PM by luc	30	1,565
how to create a custom bed file owwa	Today 02:52 PM by B124816A	8	966
mapping RNASeq w/ tophat: 3'UTR enrichment crh	Today 01:48 PM by crh	2	144
Is there any "gold standard" VCFs for well-known cell lines? lethalfang	Today 01:00 PM by lethalfang	0	70
Introducing the Trimmomatic ( 1 2 3 ... Last Page) tonybolger	Today 12:03 PM by Brian Bushnell	93	12,782
de novo assembly of 1.7Gb reptile - Best Practices? ( 1 2) jpummil	Today 11:53 AM by jpummil	25	772
matching up paired-end reads after fastx-toolkit filtering ( 1 2 3) bmtb	Today 11:51 AM by ericaramos	40	7,646
Bowtie2 --score-min or mismatch setting sanjeevksh	Today 11:24 AM by dpryan	6	137
BLAST alignment length morning latte	Today 09:26 AM by swbarnes2	7	264
SNPEff calling all intragenic SNPs as frame shifts tgarcia	Today 08:24 AM by cariboudoug	1	129
cufflinks/cuffdiff-segmentation error: 11 Sataree	Today 07:56 AM by therr	3	205
Segmental Duplications from Annovar willMD	Today 07:49 AM by vivek_	1	83
Cuffcompare not showing all query transcripts canisirius	Today 06:58 AM by canisirius	2	211
Cuffcompare stats: High sensitivity and Low specificity....... what does it mean? dhir_kumar	Today 06:14 AM by N00bSeq	2	389
Is there an easy way to filter SAM/BAM files with NM>0 dontkme	Today 05:44 AM by dontkme	3	146
Trinity Assembly error yuanhuang	Today 05:38 AM by MalcolmHoutz	7	2,443
Cuffcompare fails to properly match reference to itself N00bSeq	Today 04:12 AM by N00bSeq	0	72
Deseq2 16S copy number Manoeli Lupatini	Today 02:18 AM by Manoeli Lupatini	0	84
Correcting for high coverage in alignments bossanova352	Yesterday 04:32 PM by bossanova352	0	121
Genome size confirmation through genome assembly bioman1	Yesterday 01:05 PM by jebowers	3	222
Strand bias on estimation of DNA methylation level hui_shi	Yesterday 12:57 PM by dpryan	4	553
sum 1 to whole matrix counts in differential expression analysis. its ok? fgajardoe	Yesterday 12:27 PM by dpryan	1	132
Problems with rfam_scan.pl Palgrave	Yesterday 11:55 AM by asperjelly	1	832
DESeq2 (Mutant/WT + Two Conditions) TheSeqGeek	Yesterday 11:28 AM by Michael Love	4	217
Bowtie output zipped but not zipped thh32	Yesterday 09:14 AM by westerman	5	151
GO term enrichment with non-model organism (I have the GO terms for every locus) Genomics101	Yesterday 08:46 AM by Genomics101	0	140
cufflinks filter output gtf jake13	Yesterday 08:26 AM by Darwin	3	238
cummeRbund get isoforms paolo.kunder	Yesterday 07:59 AM by mbjohnson	6	2,149

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