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Sticky: A brief review of recent ChIP-Seq tools literature ( 1 2) ECO	04-26-2010 04:40 PM by sameet	20	24,916

Wierd SAM format chromosome column serenaliao	Today 09:18 AM by serenaliao	3	38
ChIP- Different DNA size for Input DNA and ChIP DNA on Agilent Bioanalyzer rahulr1485	05-17-2013 08:14 PM by Shubhamoy	19	2,864
Concern about short fragment size and high duplication rate in paired-end ChIP-Seq biznatch	05-16-2013 06:25 AM by syfo	8	931
Methylation patterns through Methyl-Seq adrian	05-07-2013 06:31 PM by htorres	4	4,866
How to build reference genome for targeted region(from a BED file) for alignment? serenaliao	05-02-2013 04:23 PM by lh3	2	108
How to quantify reads at a location? charlesli	04-30-2013 01:11 PM by charlesli	4	196
Comprehensive List of transcription factor binding site databases based on ChIP-Seq yjhua2110	04-29-2013 06:48 PM by DanWebster	1	623
Is Separose bead protein G sufficient for ChIP-seq analyse? fangou	04-26-2013 09:27 PM by fangou	2	189
Tools to perform QC of methylation calling ynwh	04-25-2013 05:54 AM by chadn737	3	196
Searching tool to convert MACS output (chr + coordinates) into genomic feature SS Santos	04-17-2013 06:29 AM by paolo.kunder	2	283
When to integrate the negative control? Tobikenobi	04-04-2013 01:24 AM by Tobikenobi	0	234
Is my chip-seq data garbage? DunderChief	04-03-2013 11:54 PM by Tobikenobi	10	717
Fastqc on Chip-Seq library: confusion Tobikenobi	04-03-2013 05:20 PM by silkiechicken	14	711
MeDIP-seq and compatible DNA adapters for multiplexing? DonDolowy	03-22-2013 01:26 AM by DonDolowy	0	207
ChIPseq Library Prep Amplification: How many PCR cycles do you use? JIrish	03-21-2013 02:16 PM by dsk569	1	479
Annotate a bed file from Sureselect Kit(Methylseq) serenaliao	03-19-2013 10:12 AM by serenaliao	0	240
Is methylation data gathered from bisulfite sequencing noisy between biological reps? rghan	03-18-2013 06:09 AM by dpryan	1	329
MedIp-seq Input data rachita	03-15-2013 07:17 AM by rachita	2	329
searching tool for ChIP-seq analysis of histone modification analysis tujchl	03-13-2013 09:00 AM by crazyhottommy	5	3,054
High PCR duplicate with library - possible cause? JustinNelligan	03-11-2013 02:27 AM by JustinNelligan	0	249
methylation and genomics variation haitham	03-06-2013 11:00 AM by haitham	0	261
MeDIP-Seq (Illumina/Solexa) Nina_1	02-28-2013 08:37 AM by User001	4	4,105
Public Mouse Methyl-seq Data? serenaliao	02-26-2013 11:57 PM by simonandrews	4	358
Is it ok to ChIP-Seq two samples when the ChIP worked better in one? biznatch	02-25-2013 08:34 AM by biznatch	0	278
Will over-amplification during library preparation "drown out" ChIPseq peaks? JIrish	02-25-2013 02:10 AM by JIrish	3	445
How many inputs for each replicate/cell line krespim	02-22-2013 01:53 AM by krespim	0	252
Insert size for overlapped reads? serenaliao	02-22-2013 12:50 AM by dpryan	3	635
Input required? mitcherr	02-19-2013 11:47 PM by simonandrews	1	264
Optimal Setup for MethylMiner-seq (ChIP-seq) mitcherr	02-14-2013 11:57 AM by mitcherr	0	255
Question:Most convenient way to get annotation information for a chromosome location? serenaliao	02-14-2013 11:36 AM by serenaliao	2	315

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