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Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-28-2012 02:36 PM by Peppe	25	6,814

cross-species data - questions about normalization trelek2	Today 07:29 AM by mbblack	1	13
CuffDiff strange output Pruexel	Yesterday 11:37 PM by Pruexel	0	25
EBARDenovo - A new RNA-seq do novo assembler for paired-end Illumina data htchu.taiwan	Yesterday 11:22 PM by haojam	1	675
cannot away with cuffdiff,incredible upper	Yesterday 06:24 PM by upper	0	31
RNA kinds expected in RNA-seq results Kocur	Yesterday 03:26 PM by Richard Finney	3	150
TopHat extremely low paired mapping rate. PLS HELP! Felix.Lee	Yesterday 01:00 PM by Felix.Lee	0	38
Tophat 2.0.4 and GTF conversion failure -- bug? mixter	05-21-2013 03:49 PM by adamhfreedman	2	614
segment length in tophat ickou	05-21-2013 12:30 PM by colaneri	4	1,508
Identifying small RNA sequence within whole genome sequence Inma	05-21-2013 06:25 AM by Inma	0	43
Some cummeRbund questions ( 1 2 3) rvaerle	05-21-2013 05:45 AM by Steph35	43	5,409
Is it how RNA-seq libraries should look like in Bioanalyzer? susma	05-21-2013 04:42 AM by Manal	10	450
standard of clean data Pengfei Liu	05-21-2013 01:17 AM by mastal	1	68
TopHat2 run error PBM	05-20-2013 10:31 PM by ron128	3	145
Problem with cummeRbund diffData() Enrique Zudaire	05-20-2013 07:49 AM by muthu545	1	75
How to increase rowsize in heatmap? Mags	05-20-2013 07:28 AM by muthu545	1	107
TopHat crashes when running bowtie Batool	05-17-2013 01:26 PM by earonesty	4	390
Does Cufflinks Give Me Trascriptomes? hchang10	05-15-2013 10:42 PM by sdriscoll	4	160
novoalign mapping abh	05-15-2013 10:31 AM by abh	0	79
Design of expt across multiple lanes jbono	05-15-2013 10:13 AM by jbono	2	98
Discrepancy between genotype and expressed alleles RedMary	05-15-2013 03:28 AM by RedMary	0	88
Intronic reads, ongoing transcription and co-transcriptional splicing adameur	05-14-2013 02:36 PM by lyndaben	7	1,725
Does dPCR fits RNA-seq validation? bernardo_bello	05-14-2013 10:25 AM by bernardo_bello	0	83
Normalizing with ERCC spike-in Eric Fournier	05-14-2013 06:35 AM by Eric Fournier	4	225
ERCC Spike-In Control Suthira	05-13-2013 03:54 PM by danwiththeplan	2	2,093
No Replicates Cuffdiff; How does the 'variability model good fit' apply? and other... Daniel1977	05-12-2013 11:39 PM by Daniel1977	5	356
HT-Seq Count (Banging Head Against Wall) bstamps	05-11-2013 10:26 AM by dpryan	5	176
Normalizing expression with edgeR - noob needs help trelek2	05-10-2013 07:21 AM by trelek2	0	115
Is cufflinks fundamentally flawed? ( 1 2 3 ... Last Page) drdna	05-10-2013 02:48 AM by pengchy	67	10,541
Tophat fusion result.html dashes and duplicates joethar	05-09-2013 06:28 AM by joethar	0	92
A post-doc and the case of the disappearing gene names (in Cufflinks/cuffdiff) amcloon	05-08-2013 01:33 PM by emmm	4	431

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