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Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 06:45 PM by ECO	236	618,129
Sticky: New Resources for 1000 Genomes ( 1 2) laura	08-03-2020 05:22 PM by corintio45	37	87,389
Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge khoulahan	01-16-2016 12:34 AM by locday123	8	118,916
Sticky: SEQwiki dan	06-13-2019 01:44 AM by abidalu	4	60,353

BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2 3 ... Last Page) Brian Bushnell	12-12-2019 09:36 AM by GenoMax	678	212,151
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data ( 1 2 3 ... Last Page) fkrueger	10-05-2018 02:43 AM by akramdi	648	191,301
Bowtie, an ultrafast, memory-efficient, open source short read aligner ( 1 2 3 ... Last Page) Ben Langmead	03-13-2020 04:57 AM by Arpitha	514	224,115
FastQC: A quality control application for FastQ data ( 1 2 3 ... Last Page) simonandrews	02-06-2019 10:03 PM by hiretabletsae	366	202,662
Introducing BBDuk: Adapter/Quality Trimming and Filtering ( 1 2 3 ... Last Page) Brian Bushnell	10-29-2020 03:23 AM by Lamma	335	154,945
SeqMonk: Visualisation and analysis for large mapped data sets ( 1 2 3 ... Last Page) simonandrews	08-02-2018 02:01 PM by rmf	313	110,542
SAM: a generic alignment format ( 1 2 3 ... Last Page) lh3	01-22-2014 01:25 AM by TiborNagy	292	160,694
Ray: a NEW MPI-based 100% parallel genome assembler ( 1 2 3 ... Last Page) seb567	12-10-2015 06:25 AM by jazz710	278	117,580
SSPACE: a new stand-alone scaffolding tool for small and large genomes ( 1 2 3 ... Last Page) boetsie	03-07-2019 04:19 AM by uloeber	252	107,060
Yes .. BBMap can do that! ( 1 2 3 ... Last Page) GenoMax	04-03-2020 09:40 AM by AndrewP	244	111,236
STAR: ultrafast universal RNA-seq aligner ( 1 2 3 ... Last Page) alexdobin	04-02-2018 06:59 PM by drdna	218	148,924
HTSeq: A Python framework to work with high-throughput sequencing data ( 1 2 3 ... Last Page) Simon Anders	10-29-2015 07:33 AM by Simon Anders	191	77,851
Introducing the Trimmomatic ( 1 2 3 ... Last Page) tonybolger	08-16-2018 11:22 AM by yip	189	76,112
How to install Bowtie ( 1 2 3 ... Last Page) gene_x	08-13-2015 10:58 AM by sandia	172	54,265
featureCounts: a universal read summarization program ( 1 2 3 ... Last Page) shi	02-20-2020 04:21 PM by mazoilya	155	69,750
Pindel: improved version for indels and structural variants ( 1 2 3 ... Last Page) KaiYe	07-17-2016 08:14 PM by Yongyong.Ren	147	59,077
Exome sequencing analysis manual ( 1 2 3 ... Last Page) ulz_peter	03-09-2017 05:26 AM by hafiztalha	138	70,423
Quality-, adapter- and RRBS-trimming with Trim Galore! ( 1 2 3 ... Last Page) fkrueger	11-12-2020 04:58 PM by pig_raffles	138	49,481
cutadapt: A tool that removes adapter sequences ( 1 2 3 ... Last Page) mmartin	05-19-2016 08:09 AM by mmartin	132	54,972
Introducing BBMerge: A paired-end read merger ( 1 2 3 ... Last Page) Brian Bushnell	06-19-2020 04:15 AM by ashr0077	132	74,585
Tablet - Next Generation Sequence Assembly Visualization ( 1 2 3 ... Last Page) imilne	04-23-2019 06:52 AM by Zan	123	47,408
DESeq2 ( 1 2 3 ... Last Page) Simon Anders	07-06-2015 02:45 AM by Caitriona McEvoy	123	49,945
Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files ( 1 2 3 ... Last Page) Brian Bushnell	07-10-2020 07:06 PM by phylloxera	109	37,480
Introducing Tadpole: an assembler, error-corrector, and read-extender ( 1 2 3 ... Last Page) Brian Bushnell	07-27-2019 03:57 PM by silverfox	104	40,904
MapView: a viewer for short reads alignment ( 1 2 3 ... Last Page) baohua100	08-23-2013 09:12 AM by GenoMax	99	42,713
Bowtie 2 versus BWA ( 1 2 3 ... Last Page) adaptivegenome	12-15-2013 05:15 PM by fei_deng	94	161,486
RNA-Seq Pathway and Gene-set Analysis Workflows in R/Bioconductor with GAGE/Pathview ( 1 2 3 ... Last Page) bigmw	11-17-2015 10:48 AM by gringer	92	41,161
Upcoming changes in CASAVA ( 1 2 3 ... Last Page) skruglyak	07-30-2012 11:18 PM by sklages	89	68,385
Cufflink installation problem for Linux ( 1 2 3 ... Last Page) DrD2009	06-24-2013 01:56 PM by twotwo	84	27,299
what is a paired-end read? ( 1 2 3 ... Last Page) biocc	10-26-2015 11:51 AM by mido1951	83	292,426

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