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Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 06:45 PM by ECO	236	618,232
Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge khoulahan	01-16-2016 12:34 AM by locday123	8	118,968
Sticky: New Resources for 1000 Genomes ( 1 2) laura	08-03-2020 05:22 PM by corintio45	37	87,430
Sticky: SEQwiki dan	06-13-2019 01:44 AM by abidalu	4	60,370

what is a paired-end read? ( 1 2 3 ... Last Page) biocc	10-26-2015 11:51 AM by mido1951	83	292,470
Bowtie, an ultrafast, memory-efficient, open source short read aligner ( 1 2 3 ... Last Page) Ben Langmead	03-13-2020 04:57 AM by Arpitha	514	224,148
BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2 3 ... Last Page) Brian Bushnell	12-12-2019 09:36 AM by GenoMax	678	212,208
FastQC: A quality control application for FastQ data ( 1 2 3 ... Last Page) simonandrews	02-06-2019 10:03 PM by hiretabletsae	366	202,718
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data ( 1 2 3 ... Last Page) fkrueger	10-05-2018 02:43 AM by akramdi	648	191,355
Bowtie 2 versus BWA ( 1 2 3 ... Last Page) adaptivegenome	12-15-2013 05:15 PM by fei_deng	94	161,534
SAM: a generic alignment format ( 1 2 3 ... Last Page) lh3	01-22-2014 01:25 AM by TiborNagy	292	160,722
Introducing BBDuk: Adapter/Quality Trimming and Filtering ( 1 2 3 ... Last Page) Brian Bushnell	10-29-2020 03:23 AM by Lamma	335	155,026
STAR: ultrafast universal RNA-seq aligner ( 1 2 3 ... Last Page) alexdobin	04-02-2018 06:59 PM by drdna	218	148,985
N50 explained maasha	06-11-2015 09:27 AM by kbradnam	19	141,042
Removing duplicates is it really necessary? ( 1 2) foxyg	12-02-2016 02:17 PM by moistplus	34	134,396
Ray: a NEW MPI-based 100% parallel genome assembler ( 1 2 3 ... Last Page) seb567	12-10-2015 06:25 AM by jazz710	278	117,597
Yes .. BBMap can do that! ( 1 2 3 ... Last Page) GenoMax	04-03-2020 09:40 AM by AndrewP	244	111,297
SeqMonk: Visualisation and analysis for large mapped data sets ( 1 2 3 ... Last Page) simonandrews	08-02-2018 02:01 PM by rmf	313	110,569
SSPACE: a new stand-alone scaffolding tool for small and large genomes ( 1 2 3 ... Last Page) boetsie	03-07-2019 04:19 AM by uloeber	252	107,072
Adding Read Group info to a set of Bam files ( 1 2 3) wjeck	02-23-2015 06:16 AM by sarvidsson	42	106,293
Illumina InterOp Parsers (perl and R) mchen1	02-19-2016 11:27 AM by GenoMax	18	97,032
Help with De-Multiplexing MiSeq Data Cirno	08-16-2012 02:51 PM by swNGS	8	89,690
RNA-seq and normalization numbers ( 1 2 3) zee	12-12-2012 06:44 AM by jparsons	52	84,471
HTSeq: A Python framework to work with high-throughput sequencing data ( 1 2 3 ... Last Page) Simon Anders	10-29-2015 07:33 AM by Simon Anders	191	77,869
R: heatmap color palette akolman	06-16-2011 12:51 PM by Deli Çoban	5	77,435
Introducing the Trimmomatic ( 1 2 3 ... Last Page) tonybolger	08-16-2018 11:22 AM by yip	189	76,130
How to create a BLAST database ( 1 2) aliealexandre	02-02-2015 04:34 AM by maubp	22	75,852
Pipeline to simulate short reads and call indels pmaugeri	03-01-2012 04:45 PM by xlzhang	17	75,723
Introducing BBMerge: A paired-end read merger ( 1 2 3 ... Last Page) Brian Bushnell	06-19-2020 04:15 AM by ashr0077	132	74,628
How to calculate coverage ( 1 2 3) arendon	08-20-2015 08:23 AM by criscruz	53	71,103
Exome sequencing analysis manual ( 1 2 3 ... Last Page) ulz_peter	03-09-2017 05:26 AM by hafiztalha	138	70,429
featureCounts: a universal read summarization program ( 1 2 3 ... Last Page) shi	02-20-2020 04:21 PM by mazoilya	155	69,777
sam to bam kwtennis311	07-20-2010 01:19 PM by Lee Sam	2	68,515
Upcoming changes in CASAVA ( 1 2 3 ... Last Page) skruglyak	07-30-2012 11:18 PM by sklages	89	68,437

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