Bioinformatics - SEQanswers

		SEQanswers > Bioinformatics
Bioinformatics

Page 1 of 720

101

501

Last »

Threads in Forum : Bioinformatics

Forum Tools

Search this Forum

Thread / Thread Starter	Last Post	Replies	Views
Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 05:45 PM by ECO	236	624,362
Sticky: New Resources for 1000 Genomes ( 1 2) laura	08-03-2020 04:22 PM by corintio45	37	89,363
Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge khoulahan	01-15-2016 11:34 PM by locday123	8	120,608
Sticky: SEQwiki dan	06-13-2019 12:44 AM by abidalu	4	61,324

BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2 3 ... Last Page) Brian Bushnell	03-02-2021 11:42 AM by OwenLeiser	679	217,845
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data ( 1 2 3 ... Last Page) fkrueger	10-05-2018 01:43 AM by akramdi	648	193,733
Bowtie, an ultrafast, memory-efficient, open source short read aligner ( 1 2 3 ... Last Page) Ben Langmead	03-13-2020 03:57 AM by Arpitha	514	226,020
FastQC: A quality control application for FastQ data ( 1 2 3 ... Last Page) simonandrews	02-06-2019 09:03 PM by hiretabletsae	366	205,776
Introducing BBDuk: Adapter/Quality Trimming and Filtering ( 1 2 3 ... Last Page) Brian Bushnell	03-30-2021 02:14 PM by floem7	336	161,993
SeqMonk: Visualisation and analysis for large mapped data sets ( 1 2 3 ... Last Page) simonandrews	08-02-2018 01:01 PM by rmf	313	111,890
SAM: a generic alignment format ( 1 2 3 ... Last Page) lh3	01-22-2014 12:25 AM by TiborNagy	292	161,859
Ray: a NEW MPI-based 100% parallel genome assembler ( 1 2 3 ... Last Page) seb567	12-10-2015 05:25 AM by jazz710	278	118,642
SSPACE: a new stand-alone scaffolding tool for small and large genomes ( 1 2 3 ... Last Page) boetsie	03-07-2019 03:19 AM by uloeber	252	108,317
Yes .. BBMap can do that! ( 1 2 3 ... Last Page) GenoMax	04-03-2020 08:40 AM by AndrewP	244	116,008
STAR: ultrafast universal RNA-seq aligner ( 1 2 3 ... Last Page) alexdobin	04-02-2018 05:59 PM by drdna	218	151,110
HTSeq: A Python framework to work with high-throughput sequencing data ( 1 2 3 ... Last Page) Simon Anders	10-29-2015 06:33 AM by Simon Anders	191	78,770
Introducing the Trimmomatic ( 1 2 3 ... Last Page) tonybolger	08-16-2018 10:22 AM by yip	189	77,622
How to install Bowtie ( 1 2 3 ... Last Page) gene_x	08-13-2015 09:58 AM by sandia	172	55,054
featureCounts: a universal read summarization program ( 1 2 3 ... Last Page) shi	04-21-2021 07:32 PM by biswasr0	156	71,089
Pindel: improved version for indels and structural variants ( 1 2 3 ... Last Page) KaiYe	07-17-2016 07:14 PM by Yongyong.Ren	147	59,776
Exome sequencing analysis manual ( 1 2 3 ... Last Page) ulz_peter	03-09-2017 04:26 AM by hafiztalha	138	71,287
Quality-, adapter- and RRBS-trimming with Trim Galore! ( 1 2 3 ... Last Page) fkrueger	11-12-2020 03:58 PM by pig_raffles	138	51,337
cutadapt: A tool that removes adapter sequences ( 1 2 3 ... Last Page) mmartin	05-19-2016 07:09 AM by mmartin	132	56,015
Introducing BBMerge: A paired-end read merger ( 1 2 3 ... Last Page) Brian Bushnell	06-19-2020 03:15 AM by ashr0077	132	76,542
Tablet - Next Generation Sequence Assembly Visualization ( 1 2 3 ... Last Page) imilne	04-23-2019 05:52 AM by Zan	123	48,130
DESeq2 ( 1 2 3 ... Last Page) Simon Anders	07-06-2015 01:45 AM by Caitriona McEvoy	123	50,723
Introducing Clumpify: Create 30% Smaller, Faster Gzipped Fastq Files ( 1 2 3 ... Last Page) Brian Bushnell	07-10-2020 06:06 PM by phylloxera	109	38,730
Introducing Tadpole: an assembler, error-corrector, and read-extender ( 1 2 3 ... Last Page) Brian Bushnell	07-27-2019 02:57 PM by silverfox	104	42,224
MapView: a viewer for short reads alignment ( 1 2 3 ... Last Page) baohua100	08-23-2013 08:12 AM by GenoMax	99	43,226
Bowtie 2 versus BWA ( 1 2 3 ... Last Page) adaptivegenome	12-15-2013 04:15 PM by fei_deng	94	163,576
RNA-Seq Pathway and Gene-set Analysis Workflows in R/Bioconductor with GAGE/Pathview ( 1 2 3 ... Last Page) bigmw	11-17-2015 09:48 AM by gringer	92	41,873
Upcoming changes in CASAVA ( 1 2 3 ... Last Page) skruglyak	07-30-2012 10:18 PM by sklages	89	69,518
Cufflink installation problem for Linux ( 1 2 3 ... Last Page) DrD2009	06-24-2013 12:56 PM by twotwo	84	27,711
what is a paired-end read? ( 1 2 3 ... Last Page) biocc	10-26-2015 10:51 AM by mido1951	83	294,712

Page 1 of 720

101

501

Last »

Forum Tools	Search this Forum
Mark This Forum Read View Parent Forum	Search this Forum : Advanced Search

	New posts		Hot thread with new posts
	No new posts		Hot thread with no new posts
	Thread is closed

Posting Rules
You may not post new threads You may not post replies You may not post attachments You may not edit your posts BB code is On Smilies are On [IMG] code is On HTML code is Off Forum Rules

All times are GMT -8. The time now is 08:49 AM.