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Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 12:02 AM by suparmin	27	31,724

RNA-seq of long RNAs (paired-end, stranded) -- fragmentation time emily202	09-22-2017 07:04 AM by emily202	14	511
HT-Seq counts questions BioGen	09-21-2017 11:34 AM by BioGen	0	138
Genome size in X coverage calculation for RNASeq experiments LauraGP	09-21-2017 06:22 AM by LauraGP	5	461
Dynamic/timeline RNAseq experiment design, reps vs time-points? MikhailFokin	09-20-2017 02:13 PM by MikhailFokin	5	324
Beginner questions on RNA-seq DEG [email protected]	09-20-2017 12:53 AM by [email protected]	0	174
RNA-editing pipeline for miRNAs? sombrajo	09-19-2017 05:49 AM by sombrajo	0	189
RNA-editing pipeline for miRNAs? sombrajo	09-18-2017 10:06 AM by sombrajo	0	161
Hedgehog shaped cDNA library seq198	09-18-2017 07:12 AM by pmiguel	4	1,123
Issue with Htseq-count on BAM files from Tophat2 using Galaxy Enriquez	09-17-2017 07:21 PM by neavemj	1	362
Question: (ERR): bowtie2-align exited with value 1 Vahidjj2005	09-15-2017 10:47 AM by Vahidjj2005	0	270
Hisat2 multithreading not working. tirohia	09-11-2017 11:10 PM by dpryan	5	406
Decoding the landscape of RNA modifications from transcriptome sequencing data yjhua2110	09-05-2017 04:17 PM by yjhua2110	6	3,132
Different cell-lines giving different levels of uniquely mapped reads? TWilliamson	09-05-2017 12:34 PM by TWilliamson	0	252
Single-cell transcriptomic: rare transcripts Radek	08-31-2017 11:00 AM by plyguy69	6	462
Program for clustering rna seq reads using protein database bohawk	08-30-2017 09:10 AM by bohawk	0	240
input for DEseq2 differential expression and multi comparisons between samples safa	08-30-2017 06:03 AM by safa	0	249
detection of somatic mutations using RNA seq data for tumor samples paired with WES SaraYones	08-29-2017 09:53 AM by Brian Bushnell	1	340
Help in analyzing RNA Seq data scifiction	08-22-2017 02:46 AM by katiadt	3	1,146
assembly vs mapping results katiadt	08-22-2017 02:34 AM by katiadt	0	363
RNA Modification Database and The Map of RNA Modifications rnaNGS	08-21-2017 04:53 AM by rnaNGS	0	477
Single-cell transcriptome, small library size lmw.bio	08-16-2017 05:05 PM by nucacidhunter	4	410
SNP calling from RNAseq data NinaG	08-11-2017 06:49 AM by NinaG	4	790
Mean-variance relationship in RNA-seq Slacanch	08-10-2017 07:25 AM by ronaldrcutler	1	1,631
Single-cell RNA-seq with ERCC RNA Spike-In kobeho24	08-06-2017 04:51 AM by szhaoaf	6	2,829
Cuffmerge error coultn't finda data file for Mt or Pt? Richard Barker	08-02-2017 09:22 AM by shinigam123	11	2,532
How to use mirna and mrna sequences in bowtie2? daddyodevil	08-02-2017 09:00 AM by daddyodevil	0	338
Novice at meta-transcriptomics nabilquraishi	07-31-2017 05:06 AM by Genetic Librarian	1	598
Cuffmerge create a de novo transcript for an existing one and output both: is there s JoannaF	07-28-2017 12:33 AM by JoannaF	0	486
SIRVs (Spike-In RNA Variants): external controls for RNA sequencing lexogen	07-19-2017 12:38 AM by lexogen	6	1,689
tximport for salmon output alyamahmoud	07-12-2017 01:59 AM by granger	4	1,654

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