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Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 12:02 AM by suparmin	27	30,305

SIRVs (Spike-In RNA Variants): external controls for RNA sequencing lexogen	07-19-2017 12:38 AM by lexogen	6	1,328
Novice at meta-transcriptomics nabilquraishi	07-14-2017 02:47 AM by nabilquraishi	0	220
tximport for salmon output alyamahmoud	07-12-2017 01:59 AM by granger	4	1,353
cummeRbund errors when "readCufflinks" wendy liu	07-10-2017 12:32 PM by jkofsky	16	5,274
Multi-mapped reads in RNAseq experiment nmerienn	07-06-2017 06:30 PM by GenoMax	5	457
How to extract the circRNA sequences based on the the back-spliced junctions detected tigerxu	06-27-2017 06:11 PM by tigerxu	0	256
Starting from normalized values in RNAseq Akis	06-25-2017 06:51 PM by neavemj	1	325
Confused about how to approach SNP discovery in hybridizing sister species MGCBrown	06-22-2017 08:14 AM by MGCBrown	0	247
Low mapping rate for smallRNA Seq rtleenay	06-21-2017 10:47 AM by GenoMax	2	278
is this a technical replicate or biological replicate imsharmanitin	06-15-2017 02:58 PM by nucacidhunter	1	283
10x genomics mitsaki	06-15-2017 01:35 PM by nucacidhunter	4	384
Zero FPKM value for transcript in Stringtie nachtwuenscher	05-31-2017 12:43 AM by nachtwuenscher	0	380
Shorter fragments than expected peripoe	05-30-2017 04:20 PM by nucacidhunter	3	442
Cannot use SRA data access in HISAT2 atonidas	05-29-2017 10:29 AM by GenoMax	9	567
cannot estimate transcript abundances in Stringtie atonidas	05-26-2017 01:09 AM by Genetic Librarian	1	312
cannot copy samtools-0.1.19/samtools to PATH atonidas	05-24-2017 10:01 PM by atonidas	11	481
cannot use "hisat2-build" command atonidas	05-23-2017 03:53 AM by atonidas	2	361
TruSeq Stranded Total RNA + NEB Barcodes?? RickC7	05-17-2017 05:01 AM by RickC7	2	459
GAGE update and result analysis Drake	05-16-2017 05:48 PM by bigmw	1	709
DESeq2: resultsnames missing info available in colData glados	05-10-2017 06:51 AM by glados	0	455
Using RNASeq Data to Identify Differential RNA editing t.wieland	05-04-2017 06:29 AM by bharati16mehani	1	2,100
RNAseq (HighSeq3000) - how many samples per lane for DGE merrittcr	05-02-2017 01:01 PM by GenoMax	1	481
TopHat options for small RNAseq Jeannine	05-02-2017 08:23 AM by illuminaGA	3	1,405
Analyzing the list of DGE (differential gene expression) Alexandre	04-27-2017 01:54 AM by Alexandre	0	468
Cuffnorm's FPKM - advisable to perform TPM conversion? farri	04-27-2017 12:00 AM by Dario1984	6	870
Low gene count assignment for ribo-depleted RNA-Seq data gabe_rosser	04-24-2017 02:10 AM by gabe_rosser	4	667
scRNAseq 10x Genomic design chelbi	04-19-2017 04:46 AM by chelbi	0	500
How to identify known lncRNA from RNA-seq data? xunong	04-17-2017 10:16 AM by kongantik	5	1,970
RNA-Seq libraries ok for DGE analysis? JDSwenson	04-12-2017 11:42 AM by gringer	7	1,178
How to identify protein isoforms leontovyc_roman	04-12-2017 05:20 AM by leontovyc_roman	0	414

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