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Sticky: Software packages for next gen sequence analysis ( 1 2 3 ... Last Page) sci_guy	12-25-2009 06:45 PM by ECO	236	586,334
Sticky: ICGC-TCGA DREAM Somatic Mutation Calling Challenge khoulahan	01-16-2016 12:34 AM by locday123	8	108,833
Sticky: New Resources for 1000 Genomes ( 1 2) laura	04-15-2017 09:48 AM by lucasrocha	36	77,721
Sticky: SEQwiki dan	06-13-2019 01:44 AM by abidalu	4	55,409

what is a paired-end read? ( 1 2 3 ... Last Page) biocc	10-26-2015 11:51 AM by mido1951	83	279,740
Bowtie, an ultrafast, memory-efficient, open source short read aligner ( 1 2 3 ... Last Page) Ben Langmead	05-14-2015 03:29 PM by dpryan	513	205,287
FastQC: A quality control application for FastQ data ( 1 2 3 ... Last Page) simonandrews	02-06-2019 10:03 PM by hiretabletsae	366	189,018
BBMap (aligner for DNA/RNAseq) is now open-source and available for download. ( 1 2 3 ... Last Page) Brian Bushnell	12-12-2019 09:36 AM by GenoMax	678	184,193
Bismark - A New Tool for Mapping and Analysis of Bisulfite-Seq Data ( 1 2 3 ... Last Page) fkrueger	10-05-2018 02:43 AM by akramdi	649	176,288
SAM: a generic alignment format ( 1 2 3 ... Last Page) lh3	01-22-2014 01:25 AM by TiborNagy	292	154,564
Bowtie 2 versus BWA ( 1 2 3 ... Last Page) adaptivegenome	12-15-2013 05:15 PM by fei_deng	94	153,217
STAR: ultrafast universal RNA-seq aligner ( 1 2 3 ... Last Page) alexdobin	04-02-2018 06:59 PM by drdna	218	137,905
N50 explained maasha	06-11-2015 09:27 AM by kbradnam	19	135,856
Introducing BBDuk: Adapter/Quality Trimming and Filtering ( 1 2 3 ... Last Page) Brian Bushnell	11-13-2019 07:43 AM by pilyric	331	128,604
Removing duplicates is it really necessary? ( 1 2) foxyg	12-02-2016 02:17 PM by moistplus	34	126,095
Ray: a NEW MPI-based 100% parallel genome assembler ( 1 2 3 ... Last Page) seb567	12-10-2015 06:25 AM by jazz710	278	111,661
SeqMonk: Visualisation and analysis for large mapped data sets ( 1 2 3 ... Last Page) simonandrews	08-02-2018 02:01 PM by rmf	313	103,476
Adding Read Group info to a set of Bam files ( 1 2 3) wjeck	02-23-2015 06:16 AM by sarvidsson	42	102,958
SSPACE: a new stand-alone scaffolding tool for small and large genomes ( 1 2 3 ... Last Page) boetsie	03-07-2019 04:19 AM by uloeber	252	101,359
Illumina InterOp Parsers (perl and R) mchen1	02-19-2016 11:27 AM by GenoMax	18	95,696
Yes .. BBMap can do that! ( 1 2 3 ... Last Page) GenoMax	08-22-2019 02:34 AM by GenoMax	240	92,690
Help with De-Multiplexing MiSeq Data Cirno	08-16-2012 02:51 PM by swNGS	8	89,213
RNA-seq and normalization numbers ( 1 2 3) zee	12-12-2012 06:44 AM by jparsons	52	82,310
Pipeline to simulate short reads and call indels pmaugeri	03-01-2012 04:45 PM by xlzhang	17	74,849
R: heatmap color palette akolman	06-16-2011 12:51 PM by Deli Çoban	5	74,367
HTSeq: A Python framework to work with high-throughput sequencing data ( 1 2 3 ... Last Page) Simon Anders	10-29-2015 07:33 AM by Simon Anders	191	73,148
How to create a BLAST database ( 1 2) aliealexandre	02-02-2015 04:34 AM by maubp	22	72,296
Introducing the Trimmomatic ( 1 2 3 ... Last Page) tonybolger	08-16-2018 11:22 AM by yip	189	69,444
How to calculate coverage ( 1 2 3) arendon	08-20-2015 08:23 AM by criscruz	53	68,337
Exome sequencing analysis manual ( 1 2 3 ... Last Page) ulz_peter	03-09-2017 05:26 AM by hafiztalha	138	66,477
sam to bam kwtennis311	07-20-2010 01:19 PM by Lee Sam	2	66,275
Upcoming changes in CASAVA ( 1 2 3 ... Last Page) skruglyak	07-30-2012 11:18 PM by sklages	89	63,629
Introducing BBMerge: A paired-end read merger ( 1 2 3 ... Last Page) Brian Bushnell	02-24-2019 07:49 AM by GenoMax	128	62,882
featureCounts: a universal read summarization program ( 1 2 3 ... Last Page) shi	04-10-2019 05:38 AM by Guillaume	154	62,113

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