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Sticky: Free & Open Environment for RNA-seq analysis: Galaxy (http://usegalaxy.org) ( 1 2) jgoecks	11-07-2016 01:02 AM by suparmin	27	42,710

Is cufflinks fundamentally flawed? ( 1 2 3 ... Last Page) drdna	05-10-2013 03:48 AM by pengchy	67	70,309
Trimming left end (5') of reads?? ( 1 2) blindtiger454	01-11-2018 01:34 AM by liguanghao	23	64,044
RNA quality for library generation: Low 260/230 ratio ( 1 2) Katherine.Waugh	12-13-2012 08:33 AM by Katherine.Waugh	21	64,029
DEGseq ( 1 2 3 ... Last Page) RockChalkJayhawk	03-05-2015 01:38 PM by Xi Wang	155	57,014
HTseq to DeSeq/EdgeR to Heatmap ( 1 2 3 ... Last Page) Zapages	05-22-2015 08:25 PM by fabrice	192	47,952
De-Multiplexing MiSeq Data abh	11-09-2012 05:26 AM by sklages	2	42,361
Cuffdiff or DESeq ( 1 2 3) ETHANol	08-27-2013 12:19 AM by dpryan	47	41,569
CummeRbund installation failing ( 1 2 3 ... Last Page) cnyh	07-25-2016 11:33 AM by k.h	89	35,255
HTseq count parsing headache pecanton	07-09-2013 08:36 AM by dpryan	5	33,719
Some cummeRbund questions ( 1 2 3 ... Last Page) rvaerle	02-25-2015 05:01 AM by SrCardgage	61	31,465
RIN values for RNAseq pogaora	07-15-2014 10:18 AM by earonesty	14	29,768
why low mapping rates for RNAseq? ( 1 2 3) NGSfan	09-09-2014 01:34 PM by shrutimish@gmail.com	49	28,953
Multiplexing attila.szanto	12-02-2011 08:32 AM by attila.szanto	2	27,851
DNase treatment and fragmentation of RNA ( 1 2) pig_raffles	06-11-2016 10:16 PM by Janan	31	26,958
TopHat: Aligning SOLiD strand specific RNAseq Ender985	07-09-2012 11:37 PM by dadada4ever	3	26,616
RNA-seq output ( 1 2) zorph	10-30-2012 07:43 PM by wangxj	26	24,383
What is good coverage on an RNA-seq experiment ( 1 2) LP_SEP23	08-19-2013 01:50 AM by lhlbio	36	24,060
mRNA preparation for RNA-Seq ( 1 2) Eshchar	03-19-2012 03:03 PM by ramsemm	36	23,572
installition of SAM tools package sflong	03-07-2016 02:02 PM by igor.bioinfo	12	23,019
XLOC gene id ( 1 2) JMo	04-02-2015 11:35 AM by Gonza	22	22,909
htseq-count for sam and gff3 ( 1 2 3) sofia17	11-04-2016 04:32 PM by axa9070	45	21,560
DESeq V DESeq2 ( 1 2) sebastion	10-16-2014 07:04 AM by Michael Love	35	21,443
RNA-seq, RPKM and heatmap??? sdwy2008	07-14-2011 11:41 PM by dphansti	10	21,304
Biological replicates for RNA-seq vpp605	08-29-2014 05:30 AM by eastasiasnow	15	21,175
Multiplexing experimental design question. chadn737	04-12-2011 05:18 PM by Camg	1	19,937
help for tophat -r ( 1 2) AronaldJ	04-09-2013 03:38 PM by hollyyang	37	18,133
HTSeq errors wangli	06-09-2012 03:55 PM by wangli	4	17,930
3' Bias in RNA-Seq ( 1 2) JohnK	02-13-2014 07:13 AM by pbluescript	23	17,398
A fold change heatmap for RNA seq analysis using CuffDiff and cummerbund devking	12-23-2014 10:34 AM by gareth.lim	16	16,659
extract assembled transcripts ( 1 2) zchou	02-17-2014 03:04 AM by kiran0991	38	16,286

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