Genomic Resequencing

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Genomic Resequencing

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Rating Thread / Thread Starter	Last Post	Replies	Views
mpileup only calling snps for chr1 not entire genome htetre	06-20-2017 01:56 PM by htetre	1	224
Finding two strains of a genome having SNPs/SNVs in their repeat regions smh.oloomi	06-10-2017 08:52 PM by smh.oloomi	0	203
Calling variants when mapping reads from different species than reference gruberjd	05-19-2017 11:52 AM by Brian Bushnell	3	391
Panel Validation using NA12878 DNA NielQC	05-05-2017 03:36 AM by NielQC	0	391
How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 11:03 AM by jol.espinoz	0	322
Somatic Mutation Amount cindylanzao	04-23-2017 05:02 PM by cindylanzao	0	300
Coverage of reads not homogenous (sureselect target enrichement) Sam64	04-14-2017 08:37 AM by czhang	2	2,090
Removing duplicate PacBio reads AgatheJ	02-19-2017 08:38 AM by AgatheJ	8	1,420
CONTRA cnv on chrX Michel Meyer	02-06-2017 08:00 AM by Michel Meyer	0	377
hope to know the softwares to plot this image about genomic linkage map zhdorothy	12-12-2016 06:22 PM by zhdorothy	0	1,046
fastq.gz size for human WGS coverage calculation yipukangda	11-08-2016 05:26 PM by yipukangda	2	989
Abnormaly amount of reads Mr.Zurich1992	10-02-2016 02:44 AM by dpryan	1	836
Illumina vs. Agilent Exome enrichment - higher false positive rates markusl	09-22-2016 07:22 AM by Geneus	9	5,181
Phaseolus vulgaris genome luana	08-16-2016 10:41 AM by luana	2	766
Looking for structural variants with paired-end sequencing data ThePresident	07-28-2016 04:19 AM by ThePresident	1	1,062
Variants inside and outside of target region - what's the difference? NikTuzov	06-21-2016 12:51 PM by Brian Bushnell	1	813
freebayes haplotype calling (phased variants) Mark	03-23-2016 03:31 AM by GenoMax	1	2,004
Questions in calling SNPs from RNA-seq reads metheuse	03-17-2016 06:50 AM by exome	11	6,738
does read order influence bwa mapping? jfeicheng	03-02-2016 12:02 AM by dariober	1	1,205
Calling structural variants (CNVs) with single-end reads agwe	01-18-2016 07:30 AM by simobioinfo	5	3,886
Genomic Inflation Factor Less than 1 in GenABEL RonanWhiston	12-03-2015 02:07 AM by RonanWhiston	0	1,946
ethnic databases of hg19 EvaG	11-26-2015 02:28 AM by EvaG	0	1,269
psmc bootstrap chrisbala	11-25-2015 06:21 AM by chrisbala	0	1,228
Targeted resequencing for VAF confidence - how avoid amplification bias? spliceosome	11-23-2015 07:15 AM by spliceosome	0	1,070
Why MAQ consensus seq better than SAMtools consensus ?? av_d	10-18-2015 03:44 AM by profbiot	5	13,940
dindel how to merge library files in pooled setting slowsmile	10-13-2015 07:46 PM by sandipkale	4	2,561
Key Considerations for Whole Exome Sequencing Genohub	09-23-2015 07:42 PM by Genohub	0	1,333
plink2 to EIGENSOFT .geno conversion etwatson	09-23-2015 12:42 PM by flobpf	1	1,935
Moved: A better way to map sequencing reads steveqin.emory	-	-	-
How to estimate total genetic diversity from a sequenced population? mmanhart	07-16-2015 02:35 PM by SNPsaurus	5	1,816

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