Genomic Resequencing

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Genomic Resequencing

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Rating Thread / Thread Starter	Last Post	Replies	Views
SNP calling on samples sequenced with different technology weehzer	09-10-2018 04:49 AM by weehzer	0	2,995
Calculate probability of a given sequence _anli	08-23-2018 09:24 AM by _anli	0	1,252
PL high support for each GT for all SNPS htetre	08-20-2018 12:05 PM by htetre	2	1,457
Experiences with SeqCap EZ Prime j_he	08-16-2018 04:29 PM by j_he	0	1,089
Adding GT tag to Strelka Output erichpeterson	08-09-2018 09:33 AM by GobiJerboa	1	2,496
The R-square between coverage and short variants number Chen-Tau Lin	07-31-2018 08:59 PM by Chen-Tau Lin	0	999
Control sample for human germline SNP discovery? whe	07-15-2018 07:11 PM by whe	0	1,113
SureSelect XT Probes icahn_seq	02-04-2018 09:28 AM by icahn_seq	2	3,147
SNPs at Interval Boundaries in GATK HaplotypeCaller peterlchang	10-24-2017 02:53 PM by peterlchang	0	2,620
Chromosomal translocation, which NGS method appropriate deepbiomed	09-13-2017 07:09 AM by r.rosati	4	3,306
mpileup only calling snps for chr1 not entire genome htetre	06-20-2017 02:56 PM by htetre	1	2,026
Finding two strains of a genome having SNPs/SNVs in their repeat regions smh.oloomi	06-10-2017 09:52 PM by smh.oloomi	0	1,869
Calling variants when mapping reads from different species than reference gruberjd	05-19-2017 12:52 PM by Brian Bushnell	3	2,687
Panel Validation using NA12878 DNA NielQC	05-05-2017 04:36 AM by NielQC	0	2,297
How to generate VCF from HISAT2 pre-built SNP index? jol.espinoz	04-30-2017 12:03 PM by jol.espinoz	0	2,496
Somatic Mutation Amount cindylanzao	04-23-2017 06:02 PM by cindylanzao	0	2,007
Coverage of reads not homogenous (sureselect target enrichement) Sam64	04-14-2017 09:37 AM by czhang	2	3,868
Removing duplicate PacBio reads AgatheJ	02-19-2017 09:38 AM by AgatheJ	8	3,883
CONTRA cnv on chrX Michel Meyer	02-06-2017 09:00 AM by Michel Meyer	0	2,043
hope to know the softwares to plot this image about genomic linkage map zhdorothy	12-12-2016 07:22 PM by zhdorothy	0	2,702
fastq.gz size for human WGS coverage calculation yipukangda	11-08-2016 06:26 PM by yipukangda	2	3,023
Abnormaly amount of reads Mr.Zurich1992	10-02-2016 03:44 AM by dpryan	1	2,605
Illumina vs. Agilent Exome enrichment - higher false positive rates markusl	09-22-2016 08:22 AM by Geneus	9	7,790
Phaseolus vulgaris genome luana	08-16-2016 11:41 AM by luana	2	2,497
Looking for structural variants with paired-end sequencing data ThePresident	07-28-2016 05:19 AM by ThePresident	1	2,789
Variants inside and outside of target region - what's the difference? NikTuzov	06-21-2016 01:51 PM by Brian Bushnell	1	2,528
freebayes haplotype calling (phased variants) Mark	03-23-2016 04:31 AM by GenoMax	1	3,868
Questions in calling SNPs from RNA-seq reads metheuse	03-17-2016 07:50 AM by exome	11	9,262
does read order influence bwa mapping? jfeicheng	03-02-2016 01:02 AM by dariober	1	3,000
Calling structural variants (CNVs) with single-end reads agwe	01-18-2016 08:30 AM by simobioinfo	5	5,932

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