Hi everyone .I am going to caculate the R2 for the LD estimating and the data is too big(1500,000 snps in a singal chromosome)
Haploview and Plink both can get the R2 but which one is more fasta for the big data?
Should I cut the big data into piceces when I doing the job? How can I set the standard for cutting?
Thank you
My best wishes
Haploview and Plink both can get the R2 but which one is more fasta for the big data?
Should I cut the big data into piceces when I doing the job? How can I set the standard for cutting?
Thank you
My best wishes
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