Dear all,
I have a text file generated from the maq match command aligning paired end short reads to a reference genome. Any ideas how to filter out poor quality reads from this file, i.e. those reads that have been mapped to more than 1 location in the genome?
How are people generally dealing with multiple hits from single read in the genome?
Thanks for any help
L
I have a text file generated from the maq match command aligning paired end short reads to a reference genome. Any ideas how to filter out poor quality reads from this file, i.e. those reads that have been mapped to more than 1 location in the genome?
How are people generally dealing with multiple hits from single read in the genome?
Thanks for any help
L
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