Dear All,
I want to annotate 716Mb of genome in fasta format. However when I run genscan I get following error:
>genscan HumanIso.smat input.fa
reading sequence file input.fa... 838332198 bp
reading parameter file HumanIso.smat... 14 matrices
scoring sequence...
Error : calloc failed on CNCO[strand] array
I get this error since genscan cannot process multiple fasta file. Hence I used http://cpansearch.perl.org/src/CJFIE...run_genscan.pl
This script ran successfully but the output generated were cds,peptide and exon files. However we intend to have our output in gff format.
Any suggestions?
I want to annotate 716Mb of genome in fasta format. However when I run genscan I get following error:
>genscan HumanIso.smat input.fa
reading sequence file input.fa... 838332198 bp
reading parameter file HumanIso.smat... 14 matrices
scoring sequence...
Error : calloc failed on CNCO[strand] array
I get this error since genscan cannot process multiple fasta file. Hence I used http://cpansearch.perl.org/src/CJFIE...run_genscan.pl
This script ran successfully but the output generated were cds,peptide and exon files. However we intend to have our output in gff format.
Any suggestions?
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