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  • NGS User
    Junior Member
    • May 2012
    • 1

    Bioinformatics programmer position at research lab at the University of Florida

    The Department of Medicine, Division of Infectious Diseases is seeking an OPS computer programmer. Applicants are invited for a computer programming position, focusing on bioinformatic studies of HIV/HCV biology and human-associated microbiota in health and disease. The programmer will be responsible for writing custom applications and developing workflow/analysis pipelines to support projects in the laboratory. The laboratory employs next-generation, high-throughput sequencing technology, so the candidate must be able to rapidly develop and implement web-based and report-based tools to process and analyze large volume of high-throughput sequence data. A wide range of tools from various disciplines of computer science (clustering/phylogeny/string-matching algorithms) and math (statistical, significance tests) are used for analysis of our data.

    The ideal candidate should hold a BS or MS in a scientific or engineering discipline and have completed coursework in bioinformatics, biology, computer science, and statistics. Applicants should have experience in web-based programming, working in a Unix/Linux environment, programming in R, scripting language (e.g. Perl), SQL, and biology/bioinformatics. The ideal candidate should be able to learn new languages, techniques, methods, and algorithms as needed. Additional experience in statistical analysis, and database management is a plus.

    Lab website is located here: http://wanglab.medicine.ufl.edu/

    Applicants should send resumes/CVs to the email address listed on the site.

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  • GATTACAT
    Reply to Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by GATTACAT
    Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.
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  • SEQadmin2
    Nine Things a Sample Prep Scientist Thinks About Before Sequencing
    by SEQadmin2


    I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.

    Here are nine questions we think about, in roughly the order they matter, before...
    06-18-2026, 07:11 AM

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