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GATK can't work with reference genome provided by other web site ,but GATK only have given human reference geonome. So,does GATK only work for human species?
thanks!
thanks!
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It works fine for other species. I use it mostly in mice, though it's certainly easier to do some things in humans due to the existence of the 1000 genomes project. -
Which mice genome you used ? Does it download in UCSC ?Comment
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mm9 from UCSC as well as some of the other strains from the Sanger Institute.Comment
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thank you ! I try it again.Comment
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