Hi
can you please help me with the output of tagdust? It doesn't look like the proper fastq format.
Thanks
Joseph Dhahbi
can you please help me with the output of tagdust? It doesn't look like the proper fastq format.
Thanks
Joseph Dhahbi
Code:
tagdust contaminants.fasta myfile.fastq -fdr 0.05 -o myfile_tagdust.fastq
Code:
head -10 myfile.fastq @HS1:202:C0UY5ACXX:4:1101:1485:2099 1:N:0:ACAGTG NAAGATAGTTATGAAACAGAAGATGAAAGTTCCTGGGATAATGTTGAGTTAGGAGACTACACTACACAGGCCATAGAAGATGAAACCTATAGTGATATTA +HS1:202:C0UY5ACXX:4:1101:1485:2099 1:N:0:ACAGTG #1:A1?>DFF?FC>GICEFGEHBHHIHGG?EAEFHIIBFHEGIFHBCHBFHEGEHIIDF>BBHDHGIGGCGHGDCEC>EFF?B@@@EDDDCD>CDDD<>C @HS1:202:C0UY5ACXX:4:1101:1458:2150 1:N:0:ACAGTG CTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGGCAAGTTATTGGATCAATTGAGTATAGTAGTTCGCTTTGACTGGTGAAGTCTT +HS1:202:C0UY5ACXX:4:1101:1458:2150 1:N:0:ACAGTG @<@FFADFGGFFFHJIIIIFHEEHGDD@EBA1?DGHIJAGGIJEHGG(93;BHGGCHIFA:==CEH>CC?>B@>A>??)6;A;BBA@AAC<@C>CAC>A; @HS1:202:C0UY5ACXX:4:1101:1748:2155 1:Y:0:ACAGTG CTCCGGAGGGACCCTCCAGCTGTGATGAAGGCCCAGAGCCCCATGGAAACAGTGACTGCATAGATGGGCAGCAGGCTGGCCTCATACCAGGGGTTCAGGA
Code:
head -10 myfile_tagdust.fastq @HS1:202:C0UY5ACXX:4:1101:1485:2099 1:N:0:ACAGTG NAAGATAGTTATGAAACAGAAGATGAAAGTTCCTGGGATAATGTTGAGTTAGGAGACTAC ACTACACAGGCCATAGAAGATGAAACCTATAGTGATATTA +HS1:202:C0UY5ACXX:4:1101:1485:2099 1:N:0:ACAGTG #1:A1?>DFF?FC>GICEFGEHBHHIHGG?EAEFHIIBFHEGIFHBCHBFHEGEHIIDF> BBHDHGIGGCGHGDCEC>EFF?B@@@EDDDCD>CDDD<>C @HS1:202:C0UY5ACXX:4:1101:1458:2150 1:N:0:ACAGTG CTAGAATAGGATTGCGCTGTTATCCCTAGGGTAACTTGTTCCGTTGGGCAAGTTATTGGA TCAATTGAGTATAGTAGTTCGCTTTGACTGGTGAAGTCTT +HS1:202:C0UY5ACXX:4:1101:1458:2150 1:N:0:ACAGTG
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