Hi there,
is it possible to align reads to a reference genome with BLASR using gaps only in the reads, but not in the reference genome? It seems to me that it will always put gaps in both reference and query reads.
Thanks in advance
is it possible to align reads to a reference genome with BLASR using gaps only in the reads, but not in the reference genome? It seems to me that it will always put gaps in both reference and query reads.
Thanks in advance