Tweet
I want to process some mouse genomes on an ion torrent with a 10G chip and I'd like to use the variant caller plugin. Does anyone have any idea how long that could take to run on one of their servers?
Thank you!
Thank you!
-
-
The PGM doesn't have a 10G chip.
Do you mean the Proton system? That will get you about 100M reads at 200bp; should take a couple of hours on the hardware that ships with the Proton (if you use the Life Tech variant caller). -
Torrent Suite for Mac
I was also wondering if there is any manuals or anything about how to use the torrent suite modules such as the analysis moduleComment
-
Cancer survival rates have significantly increased in the last few decades in the United States, reaching a combined 70% 5-year survival rate by 2021. Behind this number, there are years of research to find new therapies, drug targets, and early detection methods. But there is one core challenge that keeps slowing down these advances, and it’s about drug resistance.
There is no single reason why many patients don’t respond to treatment as expected. Cancer is...Today, 05:17 AM -
Love this - good data definitely starts from good input, and poor input can only give relatively poor data. I particularly like the mention of Nanodrop/absorbance based methods for quantification. It's such a toss up if you'll get an accurate reading or what amounts to a randomly generated number, and a lot of library/sequencing related issues can be traced back to poor quant.07-01-2026, 11:43 AM
-
I’m not a sequencing expert. I’m a purification scientist who uses NGS to evaluate workflows my group develops. With this perspective, we think about the sample first and the NGS workflow second. The sequencer is an exceptionally honest reporter, but it can only report on what you give it, so whether you get clean, interpretable data from an NGS workflow is largely determined before you begin.
Here are nine questions we think about, in roughly the order they matter, before...
Comment