Dear All:
This is a simple question, but I'm new to bioinformatics and would love to have some help converting file types so that google and I are not "going it alone"...
Here is the file header/format (from a very old sequencing file):
@BRITNEYSPEARS_1_FC203R3AAXX:2:1:208:502
TGGTGCAAAATATGAAGTCAATAAGATTAAAATAAA
+BRITNEYSPEARS_1_FC203R3AAXX:2:1:208:502
ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZU
all are saved as s_*_sequence.txt where *=some number...what I'd like is to convert them to *.fasta format so I can complete my "pipeline" analysis I already set-up in Linux...the softwares I intend to use are (in order):
FastQC
sickle
BWA
Picard
GATK
annotate with DAVID or ANNOVAR...
Please help -- you will earn lots of good "juju"...
This is a simple question, but I'm new to bioinformatics and would love to have some help converting file types so that google and I are not "going it alone"...
Here is the file header/format (from a very old sequencing file):
@BRITNEYSPEARS_1_FC203R3AAXX:2:1:208:502
TGGTGCAAAATATGAAGTCAATAAGATTAAAATAAA
+BRITNEYSPEARS_1_FC203R3AAXX:2:1:208:502
ZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZZU
all are saved as s_*_sequence.txt where *=some number...what I'd like is to convert them to *.fasta format so I can complete my "pipeline" analysis I already set-up in Linux...the softwares I intend to use are (in order):
FastQC
sickle
BWA
Picard
GATK
annotate with DAVID or ANNOVAR...
Please help -- you will earn lots of good "juju"...
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