I am trying to run gsnap on RNA seq data and I receive the following error
"Unexpected error. Using IIT_read code on a version 1 IIT"
Here is the command I ran
gsnap -t 16 -N 0 -m .06 -A sam --quality-protocol=illumina -s refGene.gtf -D GSNAP -d hg19 myFastq > output.sam
Does anyone know how to correct this error
I built the genome using gmap_build and did not receive any errors. However, I am unsure that the fasta file I used was in the correct format. Any help would be appreciated
-Aaron
"Unexpected error. Using IIT_read code on a version 1 IIT"
Here is the command I ran
gsnap -t 16 -N 0 -m .06 -A sam --quality-protocol=illumina -s refGene.gtf -D GSNAP -d hg19 myFastq > output.sam
Does anyone know how to correct this error
I built the genome using gmap_build and did not receive any errors. However, I am unsure that the fasta file I used was in the correct format. Any help would be appreciated
-Aaron
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