Hi ,
Am trying to install local instance of Galaxy . After unzipping the source , server starts properly with ./run.sh --reload command . However after the process is killed and again server is restarted , it fails with following error .
Traceback (most recent call last):
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/app.py", line 43, in __init__
self._configure_models( check_migrate_databases=True, check_migrate_tools=True, config_file=config_file )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/config.py", line 612, in _configure_models
verify_tools( self, install_db_url, config_file, install_database_options )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/galaxy_install/migrate/check.py", line 61, in verify_tools
latest_tool_migration_script_number )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/common_util.py", line 60, in check_for_missing_tools
tool_shed_accessible, tool_dependencies = get_tool_dependencies( app, tool_shed_url, repository_name, REPOSITORY_OWNER, changeset_revision )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/common_util.py", line 144, in get_tool_dependencies
tool_dependencies_dict = encoding_util.tool_shed_decode( text )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/encoding_util.py", line 15, in tool_shed_decode
a, b = value.split( ":" )
ValueError: need more than 1 value to unpack
Any idea if am missing out something . Also which version of Galaxy has samtools options integrated . The latest one have installed doesn't give me that .
Thanks
Am trying to install local instance of Galaxy . After unzipping the source , server starts properly with ./run.sh --reload command . However after the process is killed and again server is restarted , it fails with following error .
Traceback (most recent call last):
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/webapps/galaxy/buildapp.py", line 39, in app_factory
app = UniverseApplication( global_conf = global_conf, **kwargs )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/app.py", line 43, in __init__
self._configure_models( check_migrate_databases=True, check_migrate_tools=True, config_file=config_file )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/galaxy/config.py", line 612, in _configure_models
verify_tools( self, install_db_url, config_file, install_database_options )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/galaxy_install/migrate/check.py", line 61, in verify_tools
latest_tool_migration_script_number )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/common_util.py", line 60, in check_for_missing_tools
tool_shed_accessible, tool_dependencies = get_tool_dependencies( app, tool_shed_url, repository_name, REPOSITORY_OWNER, changeset_revision )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/common_util.py", line 144, in get_tool_dependencies
tool_dependencies_dict = encoding_util.tool_shed_decode( text )
File "/home/user1/NGS/galaxy-galaxy-central-f573461f3667/lib/tool_shed/util/encoding_util.py", line 15, in tool_shed_decode
a, b = value.split( ":" )
ValueError: need more than 1 value to unpack
Any idea if am missing out something . Also which version of Galaxy has samtools options integrated . The latest one have installed doesn't give me that .
Thanks
Comment