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  • Anyone with Solexa RNA-seq 150+bp for non-model sps with no close reference genome?

    Hi,

    I am working on a method to cluster and assemble RNA-seq data for species that don't have a close genome reference. For example, a species for which the closest available whole-genome assembly is another species that diverged 50+MYA.

    The longest publicly available datasets I've seen are Solexa ~90bp PE, but if anyone has longer and is looking for ways to analyse them, please contact me.

    Cheers,

    --
    Dr. Albert J. Vilella
    [email protected]
    Ensembl Comparative Genomics

    European Bioinformatics Institute - EMBL
    Wellcome Trust Genome Campus, Cambridge, UK

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