Hi
i have applied DESeq to my raw read counts from htseq. I have removed genes which haveall raw read counts as zero.
But DESeq is unabel to handle the remaining zeros. For example i am comparing the expression and raw raeds are 0 and 200. But instead of giving me any logfold change value it is showing infinity.
What whould be a good way to handle these zeros and i want to add that factor to all non zero values as well (just to be consistant)
i have applied DESeq to my raw read counts from htseq. I have removed genes which haveall raw read counts as zero.
But DESeq is unabel to handle the remaining zeros. For example i am comparing the expression and raw raeds are 0 and 200. But instead of giving me any logfold change value it is showing infinity.
What whould be a good way to handle these zeros and i want to add that factor to all non zero values as well (just to be consistant)
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