I'm not sure what the output is (there are no headers) and can't find any documentation. Thanks.
output.bam.hist.txt (attached)
LCH_IDT.bed
chr12 112884064 112884217
chr12 112888106 112888331
chr12 112890983 112891206
chr12 112892352 112892499
chr12 112893738 112893882
chr12 112910732 112910859
chr12 112915439 112915549
chr12 112915645 112915834
chr12 112919862 112920024
chr12 112924263 112924448
chr12 112926231 112926329
chr12 112926812 112926994
chr12 112939932 112940075
chr12 112942483 112942583
Code:
coverageBed -hist -abam IonXpress_001.bam -b LCH_IDT.bed | grep ^all > output.bam.hist.txt
LCH_IDT.bed
chr12 112884064 112884217
chr12 112888106 112888331
chr12 112890983 112891206
chr12 112892352 112892499
chr12 112893738 112893882
chr12 112910732 112910859
chr12 112915439 112915549
chr12 112915645 112915834
chr12 112919862 112920024
chr12 112924263 112924448
chr12 112926231 112926329
chr12 112926812 112926994
chr12 112939932 112940075
chr12 112942483 112942583
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