Hi,
I was wondering if there was a *vcf readily available which compares HuRef directly to hg19 instead of the hg18 as described in their paper and available on http://huref.jcvi.org/. I see versions which are obtained using liftOver, but this isn't as useful for areas spanning repeats we are interested in which were likely collapsed as misassemblies in the older builds. Any help is greatly appreciated.
Thanks!
I was wondering if there was a *vcf readily available which compares HuRef directly to hg19 instead of the hg18 as described in their paper and available on http://huref.jcvi.org/. I see versions which are obtained using liftOver, but this isn't as useful for areas spanning repeats we are interested in which were likely collapsed as misassemblies in the older builds. Any help is greatly appreciated.
Thanks!