where can I find an explanation about all the attributes in the accepted_hits.bam file I got after running tophat --fusion-search?
a line looks like:
a line looks like:
3.1.bin.1001032 256 chr1 144110611 0 35M * 0 0 CCGGGCCGCGGCGGTGAGAGCGCCGAATCCTAACC fgeffggghhhgggghhhhhhghhhhhghghhhhg AS:i:-12 XM:i:2XO:i:0 XG:i:0 MD:Z:36A3T6 NM:i:2 XF:Z:1 chr1-chr1 144110645 35m220065223F12M GGTTAGGATTCGGCGCTCTCACCGCCGCGGCCCGGTTATTCTTGGAA ghhhhghghhhhhghhhhhhgggghhhgggffegfcaffgdffdfdc NH:i:20 CC:Z:= CP:i:144110645 HI:i:0
Comment