Hi all
How to best align Ionproton RNASeq reads with gaps (spliced) to a reference genome?
TMAP does align those reads but not gapped, right?
I tried GSNAP and GMAP but they both crash at some point (maybe due to the many indels in the Iontproton reads).
Thanks!
How to best align Ionproton RNASeq reads with gaps (spliced) to a reference genome?
TMAP does align those reads but not gapped, right?
I tried GSNAP and GMAP but they both crash at some point (maybe due to the many indels in the Iontproton reads).
Thanks!
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