Software for determining Genes near peaks?

chariko

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Join Date: Jun 2010

Posts: 56
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#1

Software for determining Genes near peaks?

07-07-2010, 07:03 AM

Hi all,

I am interested in getting the list of genes near to my peaks. I have tried different packages but they only give you the nearest gene to your peak. I would be interested in getting a software in which you could get alll the genes up to a distance determined by me.

Does anybody know whether this exits?

Thanks in advance
Tags: chip-seq, gene, location, peak
kopi-o

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Join Date: Feb 2008

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07-07-2010, 07:12 AM

There are lots. For example, BEDTools (windowBED) and cisGenome. The online tool Galaxy also has this kind of functionality.
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