Hello,
I'm using Rstudio to run cummerBund on my RNA-seq results. I've done this before and it has worked beautifully. Recently I updated to Mac OS X yosemite and now I can't make the cufflinks database. I keep getting this error:
> cuff_data<-readCufflinks("diff_out")
Creating database diff_out/cuffData.db
Error in .local(drv, ...) : Could not connect to database:
unable to open database file
I've updated Rstudio and R to the most current versions but I'm still getting this error. Is anyone else having a similar problem?
I'm using Rstudio to run cummerBund on my RNA-seq results. I've done this before and it has worked beautifully. Recently I updated to Mac OS X yosemite and now I can't make the cufflinks database. I keep getting this error:
> cuff_data<-readCufflinks("diff_out")
Creating database diff_out/cuffData.db
Error in .local(drv, ...) : Could not connect to database:
unable to open database file
I've updated Rstudio and R to the most current versions but I'm still getting this error. Is anyone else having a similar problem?
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