Hey, this is my first post and have been searching for hours trying to find a clear answer to this but could not for the life of me. Any input would be much appreciated. Thanks!
I was wondering if it is possible to calculate read/coverage depth per base pair using just a GFF3 file. Basically is there a script that you can plug in just a .gff3 and it will calculate and graph coverage depth of each base pair across the entire genome?
And if it is possible, where/what exactly would I look for in the gff3 file to do this?
I was wondering if it is possible to calculate read/coverage depth per base pair using just a GFF3 file. Basically is there a script that you can plug in just a .gff3 and it will calculate and graph coverage depth of each base pair across the entire genome?
And if it is possible, where/what exactly would I look for in the gff3 file to do this?
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