Hi all,
I know related issues have been discussed before, but I can't find an answer to this specific question:
if you have a phased VCF file, how do the AD fields relate?
would you for example by phasing this:
GT:AD 0/1:42,35
go to
GT:AD 1|0:35,42
or do these fields (and PL fiels for example) keep there order related to the order of alleles listed under REF and ALT columns?
I know related issues have been discussed before, but I can't find an answer to this specific question:
if you have a phased VCF file, how do the AD fields relate?
would you for example by phasing this:
GT:AD 0/1:42,35
go to
GT:AD 1|0:35,42
or do these fields (and PL fiels for example) keep there order related to the order of alleles listed under REF and ALT columns?