Hi,everyone
I have now worked on my rna-seq data, and mapped the paired-end reads to the reference genome. For detected a background mapped reads, i want to get the reads number for each intergene regions. I have write a perl scripts, but it is very slow. Is there any software to get the mapped for a region in a GFF3 file? (my perl scripts using GFF3 format as input of the intergene region) .
Jie Xiong
I have now worked on my rna-seq data, and mapped the paired-end reads to the reference genome. For detected a background mapped reads, i want to get the reads number for each intergene regions. I have write a perl scripts, but it is very slow. Is there any software to get the mapped for a region in a GFF3 file? (my perl scripts using GFF3 format as input of the intergene region) .
Jie Xiong
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