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James W. MacDonald 01-05-2011 06:19 AM

Error during Bfast match step
I get the following error when running the match step of bfast:

Searching index file 10/10 (index #10, bin #1)...
Reading index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
Read index from /u1/reference/bfast/gatk/Homo_sapiens_assembly18_norandom.fasta.cs.10.1.bif.
Reads processed: 70250000************************************************************
In function "RGMatchPrint": Fatal Error[WriteFileError]. Message: Could not write m->readLength, m->qualLength, m->read, m->qual, m->maxReached, and m->numEntries.
The file stream error was:: Input/output error
***** Exiting due to errors *****

Any suggestions?


drio 01-05-2011 07:12 AM

Do you have any space left in the volumen where BF is dumping the data?

James W. MacDonald 01-05-2011 07:15 AM

That was my first thought. And yes, I do. I am actually running other instances of bfast match right now, without problems. It's just this SOLiD run that is giving me problems.

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