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-   -   Annotation in GFF3 (http://seqanswers.com/forums/showthread.php?t=20728)

Daniel Fernandez 06-09-2012 10:41 PM

Annotation in GFF3
 
Hi,

Can anybody tell me a program to find genes by homology that generate GFF3?

I tired AAT but only show me a table
I tried Exonerate but it give me a GFF2 and it can't load in artemis
If anybody tell me MAKER, yes it is very very useful, I tried to install it but it's very complicate for me, I tried to install it for 2 months and nothing.
And I read that is not recommended convert GFF2 to GFF3.

Can anybody help me, please?

Thanks

DNL

sphil 06-11-2012 12:45 AM

maybe here you can find a converter:
http://wiki.wormbase.org/index.php/C...g_GFF2_to_GFF3


Best,

phil

Daniel Fernandez 06-11-2012 03:51 PM

Quote:

Originally Posted by sphil (Post 75877)
maybe here you can find a converter:
http://wiki.wormbase.org/index.php/C...g_GFF2_to_GFF3


Best,

phil

Well thanks but I did not find the converter there, where is it?


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