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  • Map visualization of all the chromosomes

    Hi guys,

    Sorry to ask about this, but months ago there was a post when people mentioned a genome browser that can be able to show the coverage of all the chromosomes in a single picture from a mapping report. I don't remember the name of the program and I've tried to google it and search the threat into the forum without any success. I've also been looking one by one the properties of general genome browsers:

    but I'm not able to find this option.

    Thanks.

  • #2
    IGB (integrated genome browser)and IGV (integrative genomics viewer) have a whole genome view.

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    • #3
      is there a program that has whole genome view of mapped read coverage? I know in IGV you can view only transcript abundance

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      • #4
        Originally posted by apadr007 View Post
        is there a program that has whole genome view of mapped read coverage? I know in IGV you can view only transcript abundance
        if you can provide an appropriate file format, e.g. wig, you can visualize the entire genome (at least in IGB)

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