I am trying to run locally the fastq_groomer.
My command:
python /usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py seq.txt illumina seq_out.txt sanger
seq.txt is a fastq file with Illumina qualities.
I get the following error:
Traceback (most recent call last):
File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 37, in <module>
if __name__ == "__main__": main()
File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 10, in main
force_quality_encoding = sys.argv[5]
IndexError: list index out of range
Does anyone knows what could be the problem?
My command:
python /usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py seq.txt illumina seq_out.txt sanger
seq.txt is a fastq file with Illumina qualities.
I get the following error:
Traceback (most recent call last):
File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 37, in <module>
if __name__ == "__main__": main()
File "/usr/local/src/galaxy-central/tools/fastq/fastq_groomer.py", line 10, in main
force_quality_encoding = sys.argv[5]
IndexError: list index out of range
Does anyone knows what could be the problem?
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