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cmccabe 06-18-2015 10:12 AM

bedtools command output
 
1 Attachment(s)
Not sure what the output of this command means, but I am trying to get the average coverage per bait in a bed file. Thank you :).

Code:

coverageBed -hist -abam IonXpress_009_150603.bam -b epilepsy70_medex.bed | grep ^all > output.hist.all.txt
Code:

all        0        188        195018        0.0009640
all        1        148        195018        0.0007589
all        2        175        195018        0.0008974


WhatsOEver 06-19-2015 05:44 AM

Maybe you should have a look at the bedtools website in order to understand what you are doing ;)
http://bedtools.readthedocs.org/en/l.../coverage.html

cmccabe 06-19-2015 06:14 AM

I have read that but still not sure. Thank you :)


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