SEQanswers - Is it possible to print DNA sequences of subject organism in tblastn?

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dineshkumarsrk

04-06-2019 12:50 AM

Is it possible to print DNA sequences of subject organism in tblastn?

I did tblastn analysis by following command

HTML Code:

tblastn -query t3ss.fasta -subject org1.fasta -outfmt '6  qseqid qstart qend sseqid sstart send pident length evalue sseq' -out org1.xls

It prints the subject coordinates and translated amino acid sequences etc., Is there any way to print the DNA sequences of subject organism in tblastn?

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